SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17927

Length: 452 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene17927
CGTCGTGACCTTGGCTGTGATTCAAATGTAATGGAGGCGGTCTGAAAAAGCATACTGTTGATATGGAGGAAGTTGCAAAAATTATTGATGACATTTTCAGGAAAATGCAGGGATCTGGGGCTCCAGATCTTGCTTCCAAAGCTCGGAATGTTCAAAAATCACAAGCTATTGTACATAATGAAAAATATGATGAACCTTCTCTCCCGGAAACAAGGACTCGTTGCCCCTGTGGAAGTTCGATCGATGATGGTACAATGATTCAGTGTGATGACAACAAATGTGGAGTTTGGCAACATCTATCATGTGTAGTTATACCTGAGAAGGCTGGTGAAGAGGTTCAAACAGAAATTCCCTCAATATTTTATTGTGAAGTTTGCCGCATCAATCGTGCTGATCCGTTCTGTGAAACAATGGCACATCCTGTACTTCCAACAAGGCTCACTACATCGTTC

Ace file of the UniGene sp_v1.1_unigene17927 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	sumo ligase, putative	-	-	9.0e-36	51%
FL-Next	Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1	-	-	0.0	47%
Blast2go	protein	-	-	1.221e-35	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell growth	GO:0016049	Biological Process	1.221e-35	68%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	1.221e-35	68%
Blast2go	cell division	GO:0051301	Biological Process	1.221e-35	68%
Blast2go	response to freezing	GO:0050826	Biological Process	1.221e-35	68%
Blast2go	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	1.221e-35	68%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	1.221e-35	68%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	1.221e-35	68%
Blast2go	SUMO ligase activity	GO:0019789	Molecular Function	1.221e-35	68%
Blast2go	nucleus	GO:0005634	Cellular Component	1.221e-35	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	1.221e-35	68%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	1.221e-35	68%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	1.221e-35	68%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	1.221e-35	68%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	1.221e-35	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q680Q4-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 642 aas, your sequence is shorter than subject: 150 - 832

Fln protein: S*PWL*FKCNGGGLKKHTVDMEEVAKIIDDIFRKMQGSGAPDLASKARNVQKSQAIVHNEKYDEPSLPETRTRCPCGSSIDDGTMIQCDDNKCGVWQHLSCVVIPEKAGEEVQTEIPSIFYCEVCRINRADPFCETMAHPVLPTRLTTSF

Protein Length: 151

Fln nts: CGTCGTGACCTTGGCTGTGATTCAAATGTAATGGAGGCGGTCTGAAAAAGCATACTGTTGATATGGAGGAAGTTGCAAAAATTATTGATGACATTTTCAGGAAAATGCAGGGATCTGGGGCTCCAGATCTTGCTTCCAAAGCTCGGAATGTTCAAAAATCACAAGCTATTGTACATAATGAAAAATATGATGAACCTTCTCTCCCGGAAACAAGGACTCGTTGCCCCTGTGGAAGTTCGATCGATGATGGTACAATGATTCAGTGTGATGACAACAAATGTGGAGTTTGGCAACATCTATCATGTGTAGTTATACCTGAGAAGGCTGGTGAAGAGGTTCAAACAGAAATTCCCTCAATATTTTATTGTGAAGTTTGCCGCATCAATCGTGCTGATCCGTTCTGTGAAACAATGGCACATCCTGTACTTCCAACAAGGCTCACTACATCGTTC

Fln Alignment:

sp_v1.1_unigene17927___KKHTVDMEEVAKIIDDIFRKMQGSGAPDLASKARNVQKSQAIVHNEKYDEPSLPETRTRCPCGSSIDDGTMIQCDDNKCGVWQHLSCVVIPEKAGEEVQTEIPSIFYCEVCRINRADPFCETMAHPVLPTRLTTS
Q680Q4-2_____________KKNTVAKEAVAKLVDDTYRKMQVSGASDLASKGQVSSDTSNLKVKGEPEDPFQPEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKP-MDGNPPLPESFYCEICRLTRADPFWVTVAHPLSPVRLTAT

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
336	33	66			0.997452
337	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain