SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17912

Length: 1916 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17912

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	[S] COG1565 Uncharacterized conserved protein	-	-	37%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	71%
Blast2go	atp synthase beta subunit transcription termination factor rho-like	-	-	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	zinc ion binding	GO:0008270	Molecular Function	0.0	78%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RUL9

Fln msg: Separated hits, possible frame ERROR between 805 and 811, your sequence is shorter than subject: 469 - 490

Fln protein: VVTLAVTHFHQTHNLRLKAAQMQIQLSIQMVMVMQIAVAPLAGLFQSIARACTNPPEHEHKVREESPMVKNIKSLIKFRGGPITMAEYMGEVLTNPIAGFYMNRDVFGAGGDFITSPEVSQMFGELVGVWSMCLWDQMGQPKHVNLVELGPGRGTLMADLLRGAAKFKEFSESLSVHLVECSPALRKLQHNALCCTERDAQKDNSRDGDAFSAFSGAPVSWHADLEQVPRGVPTIIIAHEFYDALPVHQFQRTPRGWSEKLIDIAEDxxxFSFVLSREPTTASKLYLTKRLKGLFPDEIAQLEHVEVCPQAVELTKNIAKRISSDGGGALIIDYGQNGIVSDSLQAIRKHKFVHILDDPGTADLSAYVDFAYVKQIVEEMAVEAVAFGPISQSQFLGSLGINFRLEALLQNATDEQAEALQVGYWKLVGEGPAPFWEGKDELAPVGMGSRYMALSIINKKLGAPVCFS*

Protein Length: 470

Fln nts: CGTCGTGACCTTGGCTGTCACTCACTTTCATCAAACTCACAACCTTCGCCTCAAAGCAGCACAGATGCAAATACAACTATCAATACAGATGGTGATGGTGATGCAGATAGCAGTAGCGCCCCTGGCAGGGTTATTTCAGTCGATCGCTCGGGCTTGTACTAATCCCCCAGAGCACGAGCACAAGGTTCGCGAGGAGTCCCCCATGGTTAAAAACATAAAGAGCCTTATAAAGTTTCGTGGAGGCCCCATTACAATGGCAGAGTACATGGGCGAAGTCTTGACAAATCCCATTGCTGGGTTTTATATGAATCGAGATGTGTTTGGTGCTGGTGGAGACTTTATCACCTCTCCCGAAGTCAGTCAGATGTTTGGTGAGTTGGTTGGAGTATGGAGCATGTGCTTATGGGACCAGATGGGCCAACCAAAGCACGTGAACCTTGTGGAGTTGGGTCCGGGACGTGGAACACTTATGGCTGACCTTCTTCGGGGTGCTGCAAAGTTCAAAGAGTTTTCGGAAAGTCTTTCTGTGCATTTGGTTGAGTGCAGTCCTGCATTGAGAAAGCTTCAGCATAATGCATTATGCTGTACTGAACGTGATGCACAAAAGGATAACAGTAGGGATGGAGATGCATTCAGTGCTTTCTCTGGAGCTCCAGTTTCTTGGCATGCTGATTTGGAACAAGTTCCTCGAGGAGTGCCAACCATCATTATTGCACATGAGTTTTATGACGCTCTTCCAGTGCACCAATTCCAGAGAACTCCTCGGGGGTGGTCTGAAAAGCTCATTGATATTGCAGAAGACTCxxxxxxGTTTTCGTTTGTGTTGTCACGAGAACCAACAACTGCCAGCAAGCTGTACTTAACTAAGCGCCTTAAGGGCCTTTTTCCAGATGAAATAGCTCAGTTGGAGCATGTTGAAGTTTGCCCTCAGGCTGTTGAATTGACAAAGAATATTGCAAAGAGGATTTCATCAGATGGTGGTGGTGCACTTATCATTGATTATGGACAAAATGGAATAGTTTCAGACAGCTTACAGGCCATAAGGAAGCACAAATTTGTTCATATTTTAGATGACCCAGGAACTGCAGACCTTAGTGCCTATGTTGATTTTGCTTATGTAAAACAAATCGTGGAAGAAATGGCAGTGGAGGCGGTGGCTTTTGGTCCAATTTCACAGTCTCAATTTCTTGGCTCACTTGGTATTAATTTTCGTCTGGAGGCATTGCTACAAAATGCAACTGATGAACAGGCAGAAGCACTTCAGGTAGGCTATTGGAAGCTAGTCGGGGAAGGCCCAGCTCCTTTTTGGGAAGGGAAGGATGAACTTGCACCTGTTGGTATGGGTTCTAGGTACATGGCTTTGTCAATAATCAACAAGAAGCTTGGAGCTCCTGTTTGTTTCTCGTAAGTAGGTGGTCCTACCCAGATTGTTACTGTAAAATTTCTGTCTGGAAAGCCCATATAGACAGCATCTTTCTTTAGGCTTAAATGGATTGTAAGAAATTTGAATGTTTGAATCAAGCGAGCCTTTAGTAGATCCTATCAATGGCTGTGAATTTTTGAAAGAAAGAAGCCTCAAGAATTCGATAATAAAGCATAATGCAATTTTCTTGGACCAGTACGGTATATGAGATCCTGTTCAAAGAAGATATACATGCCCATCATACTTGGTTGTAGTTTGAAAGGCACTGTTACTTTTTCATAACTGGAAGAATTCTGTCAAGAGATGTGGTTGTGGCACTTGTCTTTGGAAGCCTTTTAATGGGGCCTTTTCATTTTTGATCTCTTTGAATTTCTATTATTTGTGGGTTATTGGGTACTCCTGGAATTGACTTGCTTTGAACCATATGATACAAGGACAAATGGTAAATTTCTTCTTTATGCAATAGATCTTTTTAATGGGAGATTTTAAAGGAC

Fln Alignment:

sp_v1.1_unigene17912___NPPEHEHKVREESPMVKNIKSLIKFRGGPITMAEYMGEVLTNPIAGFYMNRDVFGAGGDFITSPEVSQMFGELVGVWSMCLWDQMGQPKHVNLVELGPGRGTLMADLLRGAAKFKEFSESLSVHLVECSPALRKLQHNALCCTERDAQKDNSRDGDAFSAFSGAPVSWHADLEQVPRGVPTIIIAHEFYDALPVHQFQRTPRGWSEKLIDIAEDSxxFSFVLSREPTTASKLYLTKRLKGLFPDEIAQLEHVEVCPQAVELTKNIAKRISSDGGGALIIDYGQNGIVSDSLQAIRKHKFVHILDDPGTADLSAYVDFAYVKQIVEEMAVEAVAFGPISQSQFLGSLGINFRLEALLQNATDEQAEALQVGYWKLVGEGPAPFWEGKDELAPVGMGSRYMALSIINKKLGAPVCF
B9RUL9_______________NPPEHSHEPNSESELFKHLKGIIKFRGGPITVAEYMEEVLTNPKAGFYINRDVFGAEGDFITSPEVSQMFGEMVGVWALCLWEQMEQPKSVNLVELGPGRGTLMADLLRGASKFKSFTESLHIHMVECSPALQKLQHHNLKCVD-DNNSCGSGEERTISTLAGTPISWHTSLEQVPTGSPTIIIAHEFYDALPVHQFQRASRGWCEKMVDVAEDSxxFRFVLSPQPTPAT-LYLVKRCKWAAPEEIEKLNHIEVCPKAIDLTCTIAKRISSDGGGALIIDYGLNGVVSDSLQAIRKHKFVDILDNPGSADLSAYVDFASIRHSAEEASEAVSVHGPITQSQFLGSLGINFRVEALLQNCTEVQAEFLRTGYWRLVGEGEAPFWEGPEEQVPIGMGTRYLAMAIVNKKQGIPVPF

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
457	50		50		1.0
616		90		10	0.90298
617	90		10		0.90298
619			10	90	0.90298
1095	16	83			0.994512
1097			16	83	0.994512
1098	83		16		0.994512
1412	80	20			0.999996
1413		20	80		0.999996
1415	80			20	0.999996
1418		20		80	0.999996
1419			80	20	0.999996
1427		80		20	0.999996
1580		12		87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain