SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17881

Length: 1183 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17881 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Calmodulin binding protein, putative n=1 Tax=Ricinus communis RepID=B9RQR6_RICCO	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	36%
Blast2go	calmodulin binding	-	-	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	IQ motif, EF-hand binding site	IPR000048	-	0.0	67%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV67

Fln msg: your sequence is shorter than subject: 392 - 499

Fln protein: NGETSEVISAAAEAYNAAVATIVRAPPKDFKVVREEWAAIRIQTAFRGFLARRALRALKGFVRLQALFRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSTEGLAVQKMIDEHRIRQNKLRESEEGWCDSQGTLEEVRAKLQMRQEGAIKRERAIAYALSHQQWRSNSKTNMNYAKIEPDKNSWGWSWLERWMAAKLWENRLMEQAQMDACEIQSLKSYDDAGENLRKSHEPGKVKVRRNNISVRVAAKPPSAVSSHPTGRSSSNPGSDIQSDESSTISRGSCTPKSGNTLQTSDESVGRPNYMNSTESAKAKIRSSSAPKIRPSYDDLQLQKKVSSYNAEVKSTAGSDSSLHACKLIPPMLRSDKSSTKSGEISSCSYGESRKPFCQC*

Protein Length: 393

Fln nts: CAAATGGCGAGACATCTGAAGTTATATCTGCTGCTGCGGAGGCTTATAATGCTGCAGTGGCCACTATAGTGAGGGCTCCTCCTAAAGACTTCAAGGTTGTCAGAGAAGAATGGGCCGCCATTCGGATACAGACTGCTTTTCGAGGATTTTTGGCCAGGAGGGCACTTCGAGCGTTGAAAGGGTTTGTGAGATTACAAGCATTGTTTCGAGGTCGTCAGGTAAGGAAACAAGCAGCAGTTACCTTGAGGTGCATGCAAGCACTTGTTAGAGTTCAGGCCCGTGTAAGAGCTCGCCGTGTTCGGATGTCGACTGAAGGCTTAGCGGTGCAGAAAATGATTGATGAACATCGAATTCGCCAAAACAAACTGCGAGAATCTGAGGAGGGGTGGTGTGATAGTCAAGGAACCCTTGAAGAAGTTCGTGCAAAACTGCAAATGAGACAAGAGGGTGCAATCAAACGTGAGAGAGCAATTGCTTATGCTCTCTCCCATCAGCAATGGAGAAGCAATTCGAAAACAAACATGAATTATGCTAAAATTGAGCCAGACAAAAATAGCTGGGGTTGGAGCTGGTTAGAACGCTGGATGGCTGCAAAGCTTTGGGAGAATAGACTCATGGAACAAGCCCAAATGGATGCTTGTGAAATTCAGTCTCTCAAAAGCTATGATGATGCTGGAGAGAATCTGAGGAAATCTCATGAACCAGGCAAAGTTAAAGTTCGCAGAAACAATATTAGTGTTCGTGTTGCTGCAAAACCACCTTCAGCAGTTTCCAGTCATCCTACTGGTAGATCATCTTCAAACCCTGGCTCTGATATCCAATCTGATGAGAGCTCAACAATCTCAAGGGGATCATGCACTCCAAAATCTGGAAATACTCTGCAGACATCAGATGAGAGTGTGGGAAGGCCTAATTACATGAACTCTACAGAGTCTGCCAAGGCCAAAATACGCTCGTCCAGTGCTCCAAAGATAAGACCCTCATATGATGATCTTCAATTGCAGAAGAAAGTTTCTTCATATAATGCTGAAGTGAAGAGCACAGCCGGTTCAGATTCTTCTCTGCATGCTTGCAAATTGATTCCACCTATGTTGAGATCTGACAAATCATCTACCAAGAGTGGAGAGATTTCTTCCTGTTCTTATGGAGAGTCCCGAAAACCCTTTTGTCAATGCTAA___GTTTC

Fln Alignment:

sp_v1.1_unigene17881___EEWAAIRIQTAFRGFXXXXXXXXLKGFVRLQALFRGRQVRKQAAVTLRCMQALXXXXXXXXXXXXRMSTEGLAVQKMIDEHRIRQ------NKLRESEEGWCDSQGTLEEVRAKLQMRQEGAIKRERAIAYALSHQQWRSNSKT-NMNYAKIEPDKNSWGWSWLERWMAAKLWENRLMEQAQMDACEIQSLKSYDDAGENLRKSHEPGKVKVRRNNISV----RVAAKPPSAVSSHPTGRSSSNPGSDIQSD----ESSTISRGSCTPKSGNTLQTSDESVGR----PNYMNSTESAKAKIRSSSAPKIRPSYDDLQ----LQKKVS-----SYNAEVKSTAGS--DSSLHACKLIPPMLRSDKSSTKSGEI------SSCSYGESRKPF
A9NV67_______________EECAAIKIQTAFRGYLVRRNFHTLRGLMRLQALVQGQSVRRQATNTMRCMQALVRVHSQICSRRIRMFEENQALQHHLQQKYEKELENRTSNSEADHQQDWESSLLTKEEIEARLQSKIEAAIKRERALAYAFSHHLWKNPPKSVQTMLMEIDPDKPHWGWSWLERWMATRPWDNHRMTMKENSTRKLQTI------GEIGQKTSHIG---LKQHNAEVTNIGTIKSDPFTPLSKPSIPNKMPLTGTDIKSDVNVLRSERPRYSSRYGVAGTSSLRDDESLMSSPRIPNYMASTESAKAKVRSQSTPKQRPGTPDTEPTSYRRKRLSFPLSEASSGPYRSTKGSMFPHTSPSLKGISGTSKSKKSVSSLRDLSIESDNSSLNWGH-RKPF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
66		80		20	0.995493
81	20		80		0.995493
97	20		80		0.995493
138	20		80		0.995493
155		80		20	0.995493
182	20		80		0.995493
240	25		75		0.996473
1038	66			33	0.997452
1043		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain