SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17878

Length: 1080 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17878

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Protein CREG1, putative n=1 Tax=Ricinus communis RepID=B9RUG5_RICCO	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cellular repressor of e1a-stimulated genes family	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	FMN binding	GO:0010181	Molecular Function	0.0	76%
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	76%

Source	InterPros	Term	Type	e value	Identity
Blast2go	FMN-binding split barrel-related	IPR009002	-	0.0	76%
Blast2go	FMN-binding split barrel	IPR012349	-	0.0	76%

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
26	50	50			1.0
27		50		25	0.995533
29		50		50	1.0
87	25		75		0.996473
119	25		75		0.996473
543	93	6			0.999364
546	93		6		0.999453
547		6		93	0.999453
548	93	6			0.999453
549			93	6	0.999453
554	93	6			0.999453
602	93		6		0.99903
604		6		93	0.99903
614			4	95	0.997494
617		95	4		0.997494
751	85		14		0.999981
935	66		33		1.0
958		21	78		1.0
1011		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain