SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17863

Length: 1354 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17863

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ABA-responsive protein	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	protein	-	-	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	GRAM	IPR004182	-	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPM4

Fln msg: Separated hits, possible frame ERROR between 862 and 946, your sequence is longer than subject: 345 - 295

Fln protein: MSREEVHREQLLQSDYADKEGTTVGSTKKIVYPAVEVEGSIPTATLYGDPAVSEQERRKWGTKIMGAPAAPSAHPHNQEAAMWTAPLENPTPSSYIVKPSPVHHSKNPLESVLHSFNKWAKKAENLASNVWTNLKTGHSVPDAAWGKLSLGAKALTEGGFEALFRQTFPVSPEEKLRKTYACYLSTSTGPVAGTLYISTMKIAFCSDRPLSFTAPSGELAWSYYRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxELKYNE*QVVIPLANLKAVNPSTNKDNPAEKYIQIVTVDCHEFWFMGFVHYQKAVCNLQESTRQIHSAQLPIHTHHPEPSTFNPTSAHVY*

Protein Length: 346

Fln nts: CGTCGTGACCTTGGCTGTCTGGCAACAGACTCTTTAACACGATTCATCTGTCAATTGTGCCGCTTGTTTGAATTCTCTGTCCACTGATAAGACCATAGGATTTCATCCCACGATCCAAAATTTCTGTCAATTGTGCCGCGCGTTTGAATTCTCTGTCCACTGTGAAGACCATAGGATTTCAAGG_-_ATGAGTAGAGAAGAGGTCCACAGAGAGCAACTTTTGCAATCGGATTACGCAGACAAAGAAGGTACCACAGTCGGATCGACGAAGAAGATCGTTTATCCGGCGGTGGAGGTCGAGGGTTCGATACCCACGGCAACGCTGTATGGAGACCCAGCTGTTTCAGAGCAAGAGAGGCGAAAATGGGGCACCAAAATCATGGGAGCTCCCGCGGCCCCGTCCGCCCATCCTCACAACCAAGAGGCCGCGATGTGGACTGCCCCACTGGAGAACCCGACCCCCAGCTCGTATATCGTGAAACCATCTCCAGTACATCATTCAAAGAATCCCTTGGAGTCGGTGCTGCACAGCTTCAACAAATGGGCGAAGAAGGCTGAGAATTTGGCCTCAAATGTCTGGACCAACTTGAAAACTGGGCACAGCGTACCGGATGCGGCATGGGGAAAGCTGAGCCTGGGTGCCAAAGCCCTAACAGAAGGCGGCTTCGAAGCTCTATTCCGACAGACGTTTCCCGTCTCTCCAGAGGAGAAGTTAAGGAAAACGTACGCCTGTTATCTCTCGACATCCACCGGCCCCGTTGCGGGAACTCTCTACATTTCGACCATGAAGATTGCATTCTGCAGCGATCGCCCCTTGTCGTTCACTGCTCCCTCCGGAGAGCTGGCATGGAGTTACTACCGGGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGAACTGAAATATAATGAATAGCAGGTTGTAATTCCGTTGGCGAATCTGAAGGCTGTGAATCCTTCTACCAACAAAGATAATCCCGCTGAAAAATATATTCAGATCGTGACGGTGGATTGTCACGAGTTTTGGTTCATGGGATTTGTTCACTACCAGAAAGCGGTGTGCAACCTGCAGGAATCGACTCGTCAGATCCACTCCGCTCAGCTTCCAATTCATACGCATCATCCAGAACCTTCTACCTTCAACCCCACATCTGCCCACGTGTATTAA___TTTTAACGGGGCAATGCTTTCATGTACAAATGTATTCGTAGTGGCGCGGAGAGTATTTGGCATCTTATACTTCAGGATGGCAACTATTGGCTATTTGTAATGATAATATATTTTAAATATACTTTGTTAGGTCAAC

Fln Alignment:

sp_v1.1_unigene17863___MSREEVHREQLLQSDYADKEGTTVGSTKKIVYPAVEVEGSIPTATLYGDPAVSEQERRKWGTKIMGAPAAPSAHPHNQEAAMWTAPLENPTPSSYIVKPSPVHHSKNPLESVLHSFNKWAKKAENLASNVWTNLKTGHSVPDAAWGKLSLGAKALTEGGFEALFRQTFPVSPEEKLRKTYACYLSTSTGPVAGTLYISTMKIAFCSDRPLSFTAPSGELAWSYYRVxxxxxxxxxxxxxxxxxxxxxxxxxxxxELKYNE*QVVIPLANLKAVNPSTNKDNPAEKYIQIVTVDCHEFWFMGFVHYQKAVCNLQESTR
B8LPM4_______________MSKADDQREQLLQSDYTDKSGRTAGETQPIVYPKLNGEGSTTPKALDRDSANSQKDSRKWGTKVMGAPASPSAHPQNQEAATWTAPEEHPTPSSYIVQPSPVD-SKSPINLVQHCFNKWTKKAENLASEVWTNLKTGNSMSDAAWGKLTLGAKALTEGGFEALFRQTFSVSPDEKLKKTYACYLSTSTGPVAGTLYMSTVKIAFCSDRPLSFTAPSGEASWSYYRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxEASWSYYRLVIPLANLKAVDPSTNKDNPAEKYIQIVTVDGHDFWMMGFINYENAMSNLQESTR

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
16	25			75	0.996473
18			25	75	0.996473
19	33	33	16	16	1.0
20	33	16	16	33	1.0
21	16	33	50		1.0
22		16	50	33	1.0
23		40	20		1.0
24	40		20		1.0
25	66		16	16	0.988813
26		83	16		0.994512
641	85		14		0.993533
1205			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain