SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17835

Length: 463 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17835
ATGGGGAAATAAAGCTTCTTAAGTTTGTAAACAAGCATGATCCTGGTGACAAGTACCACATTCTACGCTTGTACGATATTTTACTATCGTGAGCATCTATTCATCGTGTGTGAACTTTTGAAAGCAAACTTGTATGAATTTCATAAATTTAATAGAGAGTCTGGAGGAGAGGTGTATTTCACTATGCCAAGATTACAGTCAATTACAATTCAATGTCTGGAAGCATTACAGTTTTTGCATGGCCTTGGTCTCATTCACTGTGATTTGAAGCCAGAGAATATCCTGGTTAAAAGCTACAGTAGGTGTGAGGTGAAGGTGATAGATCTTGGTAGCAGCTGCTTTCAAACAGATCATCTTTGCTCATATGTGCAGTCTCGTTCTTATCGTGCACCGGAGGTTATATTAGGGCTCCCTTATGATAAAAAGATTGACATCTGGTCACTTGGATGCATTCTTGCTGAGC

Ace file of the UniGene sp_v1.1_unigene17835

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9SNW7_RICCO	-	-	98%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	atp binding	-	-	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	98%
Blast2go	ATP binding	GO:0005524	Molecular Function	98%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	98%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	98%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	98%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	98%
Blast2go	Protein kinase-like domain	IPR011009	-	98%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	98%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PR87

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 739 aas, your sequence is shorter than subject: 154 - 1070

Fln protein: MGK*SFLSL*TSMILVTSTTFYACTIFYYREHLFIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFQTDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAE

Protein Length: 155

Fln nts: ATGGGGAAATAAAGCTTCTTAAGTTTGTAAACAAGCATGATCCTGGTGACAAGTACCACATTCTACGCTTGTACGATATTTTACTATCGTGAGCATCTATTCATCGTGTGTGAACTTTTGAAAGCAAACTTGTATGAATTTCATAAATTTAATAGAGAGTCTGGAGGAGAGGTGTATTTCACTATGCCAAGATTACAGTCAATTACAATTCAATGTCTGGAAGCATTACAGTTTTTGCATGGCCTTGGTCTCATTCACTGTGATTTGAAGCCAGAGAATATCCTGGTTAAAAGCTACAGTAGGTGTGAGGTGAAGGTGATAGATCTTGGTAGCAGCTGCTTTCAAACAGATCATCTTTGCTCATATGTGCAGTCTCGTTCTTATCGTGCACCGGAGGTTATATTAGGGCTCCCTTATGATAAAAAGATTGACATCTGGTCACTTGGATGCATTCTTGCTGAGC

Fln Alignment:

sp_v1.1_unigene17835___FYYREHLFIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHGLGLIHCDLKPENILVKS-YSRCEVKVIDLGSSCFQTDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAE
C0PR87_______________FVFQRHLCISFEMLGVNLYELLKLNQYRG----ISLKLLRLFAKQILDALLVLRDARVIHCDLKPENILLTTRLQSAEIKMIDFGSACMENRTVYSYIQSRFYRSPEVLLGHPYTTAIDMWSFGCIVAE

SNPs (tot: 3)

Position	A %	G %	T %	Probability
377	12		87	0.999964
427	83	16		0.999991
428	16	83		0.999991

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain