SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17806

Length: 1542 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17806

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	4.0e-10	19%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	harpin-induced protein	-	-	0.0	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	68%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Late embryogenesis abundant protein, LEA-14	IPR004864	-	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A9D0

Fln msg:

Fln protein: MVGSAPTPYVRAPGGFRENYQVSTFSFTKCCCCVFSLIFIVAVIVGVIALVVFVVLKPKKPEFNLQSVQVLSLETDPPLTSALTSMEVFLTLNIAMTFSALNPNKVGIKYSGSEFYVMYKEMPLGVAMVPPFYQPSHSNTTVQTELVVTRVNILQAAALDLIRDATVNDRVPLRITGDVGARIRVLQINSPKVEVSLDCQIVISPRRRALTSKQCGVDGVNF*

Protein Length: 224

Fln nts: ATGGGGATGGCCTGGTGACAGGGGAATAAGGAATCAAATAGTCAGCTCGCATACTTCACAATACTTTACAGCATGAAAACAATTTAATTTGCTATAATTCAGTATGGAGCTGAACGCATTAGTGATTTAATTCAGTATGGAGCTGAGCGCAGAGGGAGAGCTCTGAAACAAGGGAAATGCAAGCAAAATCCAGAGTGATTGGAAGAATTAAGGAACAGTC_-_ATGGTGGGTTCTGCTCCGACTCCCTATGTTCGAGCTCCAGGGGGATTTCGAGAGAATTACCAGGTTTCCACATTCTCCTTCACCAAATGCTGTTGCTGCGTATTCTCGCTCATATTCATAGTTGCTGTTATTGTAGGAGTAATAGCACTGGTGGTGTTCGTGGTACTAAAGCCCAAGAAGCCGGAATTTAATTTACAGAGCGTGCAAGTGCTGTCGCTCGAGACGGACCCTCCCCTCACCAGCGCCCTGACCAGCATGGAAGTCTTTTTGACGTTGAATATAGCCATGACTTTCAGTGCTCTGAACCCAAACAAAGTGGGAATCAAGTACAGCGGCAGCGAATTCTATGTCATGTACAAGGAAATGCCTCTCGGGGTGGCCATGGTTCCCCCATTCTACCAGCCTTCGCACAGTAACACTACTGTGCAGACAGAGTTGGTGGTGACGAGGGTCAATATACTGCAGGCTGCCGCGCTCGATTTGATCAGAGATGCCACGGTCAATGATCGAGTCCCGCTGCGGATCACGGGGGACGTGGGAGCGAGGATACGGGTGCTTCAGATCAATTCGCCCAAAGTTGAGGTATCTCTTGATTGTCAAATAGTAATAAGCCCTCGACGACGTGCATTGACTTCTAAACAATGTGGTGTTGATGGAGTGAATTTTTAA___TCCAAAGAATCTTTTTTAAGAAATATCACTCTAGCACCATTTCAAACTAGATAACTAACATCTTGACACAGAAACAGCAGTGTGAATTCATCAAAGGGATGAAACTTGGAGACATCATGGCAGGTGACATTAGAGCAAACCTTATCTCAATATTGTCATTTATTTGGCCATTTAGTAATTACTGTTCATGGGGCTCCATAGCCGCAGCAGAAAGCCAGTAAATGTTTGCATGTTATGAAGTTCTTTATGTACTGTTCTATCGTAACAGATGCTGCAACCTAGCATCTGGTATTGCCATATTATTACATTGTTTAGGGATTTTGTGTACTAGCTCCTTATAATCTTTTTGAGTTCAAAGCATGGAGATTACATGGCCAATTTTATAACTGTTTGCAGGAAGGGGACTGAATCACATATCTATATCTCTTTCAGCCTCTGAACATAAATATTGTAACGAGTTAACAACTACCAAAAGTGGTTAAGTTGGTTAACCAGAGAGAGATTTGTTCCTTAGGCTGTGTCAGCCAGGAAATTGTGCTTTTACCAATGGTTTGCAGGGTTGCATTAGTTGTGATCATGAATTTATGAGTTCTCCTGCATTCCTCTCTTTGTAAATCAGTGGTGTATATATTCTTGTCTTTATTACTTCAAAA

Fln Alignment:

sp_v1.1_unigene17806___MVGSAPTPYVRAPGGFRENYQVSTFSFTKCCCCVFSXXXXXXXXXXXXXXXXXXXXXXXXXEFNLQSVQVLSLETDPPLTSALTSMEVFLTLNIAMTFSALNPNKVGIKYSGSEFYVMYKEMPLGVAMVPPFYQPSHSNTTVQTELVVTRVNILQAAALDLIRDATVNDRVPLRITGDVGARIRVLQINSPKVEVSLDCQIVISPRRRALTSKQCGVDGVNF
D5A9D0_______________MVGSSPPPYRRAPGGFRENNQVSTFSFTRCCCCVFSLIFIVVAIVGVIALVVFMVLKPKKPEFNLQSVTVVSLETYPPLGSALTSMEVFLTLNITMAFTALNPNKVGIKYSGSEFYVMYKDMPLGVAVVPPFYQPSHSNTTVQTELVVTRVNILQAAALDLIRDATVNDRVPLRITGDVGARIRVLQINSPKVQVSLDCQIVISPRRRALTSKQCGVDGVIF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
122	50		50		1.0
126			50	50	1.0
127			50	50	1.0
128			50	50	1.0
314		12		87	0.992554
320			87	12	0.992554
322	87		12		0.992554
323			12	87	0.992554
325		87	12		0.992554
328	12		87		0.992554
370			87	12	0.992554
527		88		11	0.923564
535	88		11		0.923564
1536	25	25			0.995533
1539		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain