SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17801

Length: 2086 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17801
CGTCGTGACCTTGGCTGTCACTCAGTTGGTCTGCTCTGTTCTCGTTTCTTTCTAAATGCTTTCTAAATGCATATACAGGTTGTGGTCTGATTCAATGTACACTAATTTGATTTCTCTGTTTGCTCCTGTGGTTTTTTTGTGGTGTACAGTAATGTCCGCATTTAGTACTTTTATGGTTGCACAGATTTTAACTTGAATGTGGCATCTGCAGTCTGCTATAATAAGCATTCGTTATGTCCTGTTGATTCTTTGATTTGTGTGGATTTCATTCTTACTTGTGCATCCTTTGAAGTAGGAATCTTGATGCTTTCCTCCGTATTCATGCTCCCGCGTCATTTATTTTAAAACTCTGTATGTGCCCTAAAACTGTGTATTATGCAATGACAAGAAGTTCCCCAGACCCTCCCACATCTTCAACACCTGCAAGCTCCAGATGGAGCAGAGAGCAGGACATGGCATTTGAGGATGCTCTTGCAGTGCACGACGAGCAATGCAAAGATCGGTGGGAAAAGATTGCTGCACTTGTCCCTGGGAAGGATGCTGCAGAAATTAAACTTCATTATGAGATCCTAGTTGAAGATATCGAGTGCATTGAAGCAGGGCTTATTGCTCTTCCTTCTTATGTTTCTTCTGGAGAAGGGAGTGCTGATCAAGCTGTGGAAATTCAAGGTACTAAGAATAGATCACATTCTGCAAACTTTCAAAGTGGCGATGTCAATCCAACAAGAAAGGGTGGCTCTAAGGCGGACCAGGAGCGGCGCAAGGGAATTGCTTGGACCGAAGAAGAACACAGGTTATTTCTGCTTGGACTGGACAAGTTTGGTAAAGGGGACTGGCGTAGCATCTCCAGAAATTGCGTTATATCGAGGACTCCTACCCAGGTGGCTAGTCATGCTCAGAAATATTATAACCGTCTGAACTCTGCAAATAAAGACAGAAGACGGTCTAGTATTCATGATATCACTAGCGTGAACGATGGAGACACATCAGCACCACAGGGACCTATCACAGGTCAAGAGAATGGTTCCGCAGGAGCTGTGGGAAAGCCTCCTAAGAGTTTGTCTCAGCCATCTCTACCAAGAGTTGTTGCATATGGACCTCCTGTGGGTCAACCTATTGCTGGGCCTGCTAGTTCTGCTGTTGGTACTCCCATCATGATTCCTCCTGGACATGTTCCTTATGTTTCAAGTGGACCTTTTCCAGGATCAGTAGTTCCTGGTACTCCCATGAATCTTGTGCCAGTTTCATATGCCATTTCTCAGCCAACAATGCATCAATAGAAAGAATGTGATTGCTCAAAATTAAAAGCGAGGGACTGAATCTAACTTGTACATGTAAGTGTGCTCTTTATGTTCCCTTATGGTGTAATGTAGGAAGCAGCACTGCTCTGTCAACAAATCTGTATATGCTGGCAAACTTGTTTATTGTTGTCATTAAGGACCATATGTTTTAGAGGTGAAAGAGTTCAAGATGTTCTTCTGTACAAAAGAGTGTTTGAGATGAAATTCATTATATCTTTGTGTCAGATATTGATAGAATTGGAGGTAATGGCCCTAATTTTCCTTCAAATCTGGTGCAGTTTTAGAAATTAAGGAGCTGTCAACCTAAGGTCAAAAACCTCAAACTTCATGAACAAGTTGTGTATATTCAATATTGACAGATTGGTACACGGTGCACTGAAATGTCAATGTCATTTGATAATTTTCTTGTCTTTTTGGAACAAGGAAACTGACTATTGTAATACAGTTCAGGAAGTTTGTAGGTTTGCCATTTCAAATTTAAGCCAAGTCATCCTTATCATTTTGCTTCCATGGCAGAAAGGTTGTATCTGTTTTGTTTCCATTAAAGTGGTCCACAAATGAACCTGAAAGATGGTCTTTCTGGGTTTTAAGAGCTGCAAATTCTCATTCTGTACTTGACGTTATGATTTGCCATGATCTTTTGTAACTTGGCATCCTCCAATTGTAGGGGAATGATATGATCCCCAATAATGCACAGAATTTGATAGCATCTCCTGGCATGACCCTGCTTTTCCTTCAGGGGCAGTGTAAATAAGCATGATTAAAGTTTATCTGCAGTTGTCTGC

Ace file of the UniGene sp_v1.1_unigene17801

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	dna binding	-	-	68%

Source	GOs	Term	Type	e value	Identity
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	0.0	68%
Blast2go	DNA binding	GO:0003677	Molecular Function	0.0	68%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKB7

Fln msg: your sequence is longer than subject: 309 - 270

Fln protein: MCPKTVYYAMTRSSPDPPTSSTPASSRWSREQDMAFEDALAVHDEQCKDRWEKIAALVPGKDAAEIKLHYEILVEDIECIEAGLIALPSYVSSGEGSADQAVEIQGTKNRSHSANFQSGDVNPTRKGGSKADQERRKGIAWTEEEHRLFLLGLDKFGKGDWRSISRNCVISRTPTQVASHAQKYYNRLNSANKDRRRSSIHDITSVNDGDTSAPQGPITGQENGSAGAVGKPPKSLSQPSLPRVVAYGPPVGQPIAGPASSAVGTPIMIPPGHVPYVSSGPFPGSVVPGTPMNLVPVSYAISQPTMHQ*

Protein Length: 310

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTCTGCTCTGTTCTCGTTTCTTTCTAAATGCTTTCTAAATGCATATACAGGTTGTGGTCTGATTCAATGTACACTAATTTGATTTCTCTGTTTGCTCCTGTGGTTTTTTTGTGGTGTACAGTAATGTCCGCATTTAGTACTTTTATGGTTGCACAGATTTTAACTTGAATGTGGCATCTGCAGTCTGCTATAATAAGCATTCGTTATGTCCTGTTGATTCTTTGATTTGTGTGGATTTCATTCTTACTTGTGCATCCTTTGAAGTAGGAATCTTGATGCTTTCCTCCGTATTCATGCTCCCGCGTCATTTATTTTAAAACTCTGT_-_ATGTGCCCTAAAACTGTGTATTATGCAATGACAAGAAGTTCCCCAGACCCTCCCACATCTTCAACACCTGCAAGCTCCAGATGGAGCAGAGAGCAGGACATGGCATTTGAGGATGCTCTTGCAGTGCACGACGAGCAATGCAAAGATCGGTGGGAAAAGATTGCTGCACTTGTCCCTGGGAAGGATGCTGCAGAAATTAAACTTCATTATGAGATCCTAGTTGAAGATATCGAGTGCATTGAAGCAGGGCTTATTGCTCTTCCTTCTTATGTTTCTTCTGGAGAAGGGAGTGCTGATCAAGCTGTGGAAATTCAAGGTACTAAGAATAGATCACATTCTGCAAACTTTCAAAGTGGCGATGTCAATCCAACAAGAAAGGGTGGCTCTAAGGCGGACCAGGAGCGGCGCAAGGGAATTGCTTGGACCGAAGAAGAACACAGGTTATTTCTGCTTGGACTGGACAAGTTTGGTAAAGGGGACTGGCGTAGCATCTCCAGAAATTGCGTTATATCGAGGACTCCTACCCAGGTGGCTAGTCATGCTCAGAAATATTATAACCGTCTGAACTCTGCAAATAAAGACAGAAGACGGTCTAGTATTCATGATATCACTAGCGTGAACGATGGAGACACATCAGCACCACAGGGACCTATCACAGGTCAAGAGAATGGTTCCGCAGGAGCTGTGGGAAAGCCTCCTAAGAGTTTGTCTCAGCCATCTCTACCAAGAGTTGTTGCATATGGACCTCCTGTGGGTCAACCTATTGCTGGGCCTGCTAGTTCTGCTGTTGGTACTCCCATCATGATTCCTCCTGGACATGTTCCTTATGTTTCAAGTGGACCTTTTCCAGGATCAGTAGTTCCTGGTACTCCCATGAATCTTGTGCCAGTTTCATATGCCATTTCTCAGCCAACAATGCATCAATAG___AAAGAATGTGATTGCTCAAAATTAAAAGCGAGGGACTGAATCTAACTTGTACATGTAAGTGTGCTCTTTATGTTCCCTTATGGTGTAATGTAGGAAGCAGCACTGCTCTGTCAACAAATCTGTATATGCTGGCAAACTTGTTTATTGTTGTCATTAAGGACCATATGTTTTAGAGGTGAAAGAGTTCAAGATGTTCTTCTGTACAAAAGAGTGTTTGAGATGAAATTCATTATATCTTTGTGTCAGATATTGATAGAATTGGAGGTAATGGCCCTAATTTTCCTTCAAATCTGGTGCAGTTTTAGAAATTAAGGAGCTGTCAACCTAAGGTCAAAAACCTCAAACTTCATGAACAAGTTGTGTATATTCAATATTGACAGATTGGTACACGGTGCACTGAAATGTCAATGTCATTTGATAATTTTCTTGTCTTTTTGGAACAAGGAAACTGACTATTGTAATACAGTTCAGGAAGTTTGTAGGTTTGCCATTTCAAATTTAAGCCAAGTCATCCTTATCATTTTGCTTCCATGGCAGAAAGGTTGTATCTGTTTTGTTTCCATTAAAGTGGTCCACAAATGAACCTGAAAGATGGTCTTTCTGGGTTTTAAGAGCTGCAAATTCTCATTCTGTACTTGACGTTATGATTTGCCATGATCTTTTGTAACTTGGCATCCTCCAATTGTAGGGGAATGATATGATCCCCAATAATGCACAGAATTTGATAGCATCTCCTGGCATGACCCTGCTTTTCCTTCAGGGGCAGTGTAAATAAGCATGATTAAAGTTTATCTGCAGTTGTCTGC

Fln Alignment:

sp_v1.1_unigene17801___EQDMAFEDALAVHDEQCKDRWEKIAALVPGKDAAEIKLHYEILVEDIECIEAGLIALPSYVSSGEGSADQAVEIQGTKNRSHSANFQSGDVNPTRKGGSKADQERRKGIAWTEEEHRXXXXXXXXXXXXXWRSISRNCVISRTPTQVASHAQKYYNRLNSANKDRRRSSIHDITSVNDGDTSAPQGPITGQENGSAGAVGXXXXXXXXXXXXRVVAYGPPVGQPIAGPASSAVGTPIMIPPGHVPYVSSGPFPGSVVPGTPMNLVPVSYAISQPTMHQ
B8LKB7_______________EQNKAFEMALAKHLEDTDDRWEKIASAVPGKSPAEVKRHYEILVEDIASIEAGRVPIPSYLDEVAEQADDGTAKKGGTHSSAYANLPS-ESNGTGKGTSKSDQERRKGIPWTEEEHRMFLLGLEKFGKGDWRSISRNFVISRTPTQVASHAQKYFIRLNSMNRDRRRSSIHDITSVNGSDVSSPQGPITGQGNQSSGSAGQPANHVSQPGIPSV--YGATVGQPIAGPMVSAVGTPVMLPPGHAPYV-----------------VPVAYPMPQPTMHR

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
210	40	60			1.0
213		40		60	1.0
216		80		20	0.995493
327	20	80			0.995493
329	20	40		40	1.0
363	66			33	0.997452
364	66	33			0.997452
365	66		33		0.997452
664	83		16		0.994512
711		85		14	0.993533
750		85		14	0.993533
824		33	66		0.997452
1030		61		38	1.0
1041		38		61	1.0
1042	38		61		1.0
1097		13	86		0.999973
1157	63	36			1.0
1186			11	88	0.923564
1187			11	88	0.923564
1192		33		66	1.0
1225	37			62	1.0
1235		60	40		1.0
1247			40	60	1.0
1265		90	10		0.90298
1291		27		72	1.0
1292	27		72		1.0
1328		88	11		0.923564
1373			11	88	0.923564
1374	88		11		0.923564
1415	27	72			1.0
1770	25	75			0.996473
1801	50	50			1.0
1838			66	33	0.997452
1924		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain