SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17789

Length: 1265 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17789

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LEA_2 domain containing protein	-	-	7.0e-08	22%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	protein	-	-	0.0	62%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS41

Fln msg:

Fln protein: MGVGSTSNSPPPLLPPQHREEYTVYGYPTEPCYVILDSAPVPQRRSNRRSLTYAGCGALSMVMIAVAAYFLWPSDPRIEVVRMRLNKIDWRTEKSSGSFLPHLFLDLSMGLTVKVTNRDYLGVYYDYLNVGIAYRGEKIGRVTSENGAYIPPRGTAYVDATLDIEGFQVLADVVYLLEDIAHGHIPLQTVTDFDGYIRLFSLKVPLQAIMSCEVVVDTNEQTVLRQECELG*

Protein Length: 233

Fln nts: ATGGGGAGCCACTATAGGGTCGGTGGGTATATCCCAAAATTATCGTTGCGTGCACTCATTTTGCCAGAAAAGGGGGCCATACAAACAAATAGGGCTTACAATTGGGGAGAGAACATTAAAATGTTTGCGATGAATTGATGGAGCGGTGACCAGTCCCCTCTGATTCAGACAAAGCGAGCAAGGGGCAAATTCTGGTGAAAA_-_ATGGGAGTGGGGAGTACCAGCAATTCTCCCCCGCCTCTCCTTCCTCCTCAACATCGGGAGGAATACACTGTATATGGATACCCAACAGAGCCCTGCTATGTAATTCTTGATTCAGCTCCAGTTCCTCAGCGCAGGAGTAATAGGCGATCTCTTACCTATGCAGGATGCGGGGCTTTGTCAATGGTCATGATCGCGGTTGCTGCTTATTTTCTGTGGCCGTCCGATCCGCGAATCGAAGTGGTTCGGATGCGGCTGAACAAAATAGATTGGAGAACAGAGAAATCTTCGGGGTCCTTTCTGCCCCACTTATTTCTGGACTTAAGCATGGGGTTGACGGTGAAGGTGACGAACAGGGACTACCTGGGTGTTTATTATGATTATCTCAATGTGGGAATTGCCTACCGCGGGGAGAAAATCGGGCGTGTAACTAGTGAGAACGGCGCTTATATTCCTCCCCGGGGGACTGCGTACGTGGATGCCACCCTGGACATCGAGGGCTTTCAAGTCCTCGCTGACGTGGTCTACTTGCTGGAGGACATTGCTCATGGTCATATTCCTTTGCAGACTGTCACCGATTTTGATGGCTACATACGCCTATTCTCTCTCAAAGTGCCCTTACAGGCTATCATGTCTTGTGAAGTAGTCGTGGATACAAATGAACAAACCGTTCTTAGACAGGAATGCGAACTTGGGTAA___TGATACTGAAGTCAGGTTGGTTCAAAATCCAAATTCCTTAAGTAGGCTCTTGGAGAAAGTAACTAACTAAAGATAATTTGATTCAATCTTCCATTGAATTATACAAGAATGTATATGAGGGAACATATTTCTTAGTTCCAATGCAAACATGTTTAGATGTGTAAAATTCAGCCTATCTCAATTTAAAACATGATCTGTAAATTAAATGGAGATACTAAAATTATTCTGCGTTTCACTGCGTCCCTTAGCCATATCTGTCTACTGTTATCTATGTAGATTGATTGAAGAACATATCAGTGTTAAACTTACGTAAATAAATGGGAGTAAAGTGTTCAAGTCTAGGATAAATTAATGTAATGTGCCATGGT

Fln Alignment:

sp_v1.1_unigene17789___MGVGSTSNSXXXXXXXQHREEYTVYGYPTEPCYVILDSAPVPQRRSNRRSLTYAGCGALSMVMIAVAAYFLWPSDPRIEVVRMRLNKIDWRTEKSSGSFLPHLFLDLSMGLTVKVTNRDYLGVYYDYLNVGIAYRGEKIGRVTSENGAYIPPRGTAYVDATLDIEGFQVLADVVYLLEDIAHGHIPLQTVTDFDGYIRLFSLKVPLQAIMSCEVVVDTNEQTVLRQECELG
A9NS41_______________MGLGSTSNSPPRLPP-QHREDYTVYGYPTEPCYVVLDSAPPPPRRGDVRLLTYAGYGVLSIVIILVAAYFVWPSDPRIEVVRMGLNKIEWRPEKFPGSFLPRVFLNLSMELTVKVTNKDYLGVYYDHVNVGIAYRGEKIGRVTSENSAYIPPRGTAYVDATLDIDGIQVLADVIYLLEDIARGHIPLQTVTDFDGYIRLFSLKVPLQAIMSCEVDVDTNEQTVLRQECDIG

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
170		66	33		0.997452
171	33		66		0.997452
323		83		16	0.994512
343	16		83		0.994512
811	16		83		1.0
924	95		4		0.997218
927		95		4	0.997218
1257			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain