SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17786

Length: 1848 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17786

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to AO (L-ASPARTATE OXIDASE); L-aspartate oxidase n=1 Tax=Vitis vinifera RepID=UPI0001984C26	-	-	69%
FL-Next	sp=Succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	34%
Blast2go	l-aspartate oxidase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	L-aspartate oxidase.	EC:1.4.3.16	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Alanine, aspartate and glutamate metabolism	00250	75%
Blast2go	Nicotinate and nicotinamide metabolism	00760	75%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	NAD biosynthetic process	GO:0009435	Biological Process	75%
Blast2go	L-aspartate oxidase activity	GO:0008734	Molecular Function	75%
Blast2go	chloroplast	GO:0009507	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal	IPR003953	-	75%
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal	IPR004112	-	75%
Blast2go	Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal	IPR015939	-	75%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: O82663

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 459 aas, putative chimeric sequence, your sequence is shorter than subject: 99 - 634

Fln protein: VAVITKAEPHESNTNYAQGGVSAVFAPSDSVENHIQDTIVAGAYLCDEETVKVVCTEGPDRVKELITMGASFDHGEDGSLHLAREGGILITVLFMQQI*

Protein Length: 100

Fln nts: GTGGCAGTCATCACAAAAGCTGAACCACATGAGAGTAATACAAATTATGCACAAGGCGGTGTTAGTGCAGTTTTTGCTCCTTCAGATTCTGTTGAGAACCACATTCAGGATACTATTGTTGCTGGTGCATACTTATGTGATGAAGAGACTGTAAAGGTGGTATGCACAGAAGGCCCAGATAGAGTTAAAGAATTGATCACCATGGGTGCATCCTTTGATCATGGTGAAGATGGTAGCTTACATCTTGCTAGAGAGGGGGGCATTCTCATCACCGTATTGTTCATGCAGCAGATATGA___CAGGAAGAGAGATTGAGCGAACTCTGTTGAAGGCTGTTGTTAATAACCCCAACATCACCATGTTTGAGCATCACTTTGCCATAGACTTGCTTACGTTTGAGGATGGATCAAATATTTACTGTCATGGTGTGGACACATTGAACACCAACACTAATGAGGTGGTCCGCTTCATTTCAAGGGTAACTTTACTTGCATCTGGTGGGGCTGGACATATTTATCCTACTACCACAAATCCTCGTGTTGCAACTGGTGATGGTATTGCGATGGCACATAGAGCATCTGCAGTTATTTCAAATATGGAGTTTGTACAATTTCATCCAACTGCATTAGCTGATGAAGGTCTACCAATTAAACCTCATACACGAGAAAATGCATTTTTAATAAGTGAAGCTGTTCGTGGGGCTGGTGGTACTCTTTACAATCAAGCTATGGAAAGGTTCATGCCACAGTATGATTCCAGAGGAGAACGTCGTGACCTTGGCTGTCACTCAACGTAGTATTGATGATCAATTAAAGAAACGGAATGAGAGATATGTTCTATTGGATATAAGTCACAGAGCCAAGGAGGAAACATTGTATCATTTCCCAAATATTGCTGCTGAGTGTTTGAAGTATGGCCTTGACATAACAGAAAGTCCTATACCTGTAGTGCCAGCTGCACATTATATGTGTGGTGGGGTTCAAGCTAAACTTCATGGAGAGACACCTATAATGGGTCTATATGTAGCTGGTGAAGTTGCCTGTACAGGACTTCATGGTGCCAATAGGCTTGCAAGCAACTCATTACTTGAAGCACTTGTGTTTGCACAGAGAGCAGTTGAACCATCATTGGATTACATGGTTAGATCAAATATTGACATTGACGAGTCAGTTAAATGGCCTTTCCCTGTTGTACCTACTGTGCTTGGGGTTTTGCAACTCAGTGAAGTAAAGCACATTACAGGATTAACAAGGATGAAGTTGCAAAAGATAATGTGGGAATATGTTGGAATTGTTCGATCTATTGATTGTCTTAAAATAGCTGAGAAGTCTTTGGCAGAATTAGAACTTGAGTGGGAAGACCATCTATTTCGATTTGGGTGGAGGCCATACATGGTAAATCTTGAAGTCTGTGAATTGCGGAACCTATTTTCATGTGCCAATCTAGTGGTCAGCAGTGCTCTAGCAAGACAAGAAAGTAGGGGACTGCATTATATAGTGGACTTTCCTAACCTTGTGGAAAGCCAACGGCTTCCAACAATTATATTCCCTAGTTCATCATTGAAATCTACTTGGAGTACACAGTTGGTTCACAGGCTTTTTGCTGATCCTGTTTGCTTATGTGACAATCCAAATGAAAACAAGGGTGGAACTTTGGTAGGACAATCTTAATATGTACACATCTTAAACATATCCAATTGTGCTTTTCAAGCACACTGTCGAGTAGATGCATTTATTCTTTCAATGTCATGAAGGAACATTTTTCAATTAATATTCTTCAAAGCTATACATTTCACAAAAGAATGCCTCTGTAATGTTATAGGTAAATGATATTTGATCATAAATGTGTTG

Fln Alignment:

sp_v1.1_unigene17786___AVITKAEPHESNTNYAQGGVSAVFA--PSDSVENHIQDTIVAGAYLCDEETVKVVCTEGPDRVKELITMGASFDHGEDGSLHLAREGG
O82663_______________ACITKLFPTRSHTVAAQGGINAALGNMSEDDWRWHMYDTVKGSDWLGDQDAIQYMCREAPKAVIELENYGLPFSRTEEGKIYQRAFGG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
425	40	60			1.0
430	40			60	1.0
431			60	40	1.0
1232	25		75		0.996473
1234	75		25		0.996473
1235	75		25		0.996473
1236	75		25		0.996473
1319	66		33		1.0
1335	14	85			0.993533
1337			14	85	0.993533
1338			14	85	0.993533
1349		25	75		1.0
1350	66		33		1.0
1351	75			25	1.0
1353			25	75	1.0
1358		25	75		1.0
1360			75	25	1.0
1363	75	25			1.0
1364	75			25	1.0
1473	75	25			1.0
1534		87		12	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain