SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17785

Length: 966 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17785

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	WAK-like kinase n=1 Tax=Solanum lycopersicum RepID=Q6QLL5_SOLLC	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	44%
Blast2go	protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	72%

Source	GOs	Term	Type	Identity
Blast2go	cellular metabolic process	GO:0044237	Biological Process	72%
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	72%
Blast2go	protein binding	GO:0005515	Molecular Function	72%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	72%
Blast2go	nucleotide binding	GO:0000166	Molecular Function	72%
Blast2go	mitochondrion	GO:0005739	Cellular Component	72%

Source	InterPros	Term	Type	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	72%
Blast2go	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	72%
Blast2go	Serine/threonine-protein kinase, active site	IPR008271	-	72%
Blast2go	Protein kinase-like domain	IPR011009	-	72%
Blast2go	Protein kinase, ATP binding site	IPR017441	-	72%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	72%
Blast2go	Tyrosine-protein kinase, catalytic domain	IPR020635	-	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: Distance to subject end: 217 aas, your sequence is shorter than subject: 322 - 656

Fln protein: RRDLGCHSFQLGWWIEGDCSNKCSTNGNCTQFVSPNTGNPVHKCSCNDGFVGDGYLQGDGCRKEKCNPLTEHCGGVTGVAVLVGGLSAGATLVVVIVLLYCFFKKKALANERRRSRKKLLSANGGSFGIPIFTYKELEKATKGFSEEERLGNGAFGTVYAGKLKGDCPVAVKKIRHIDTHGIEQMMNEIKLLSSVEHPNLVRLMGCCLENGEPILVYEYMPNGTLGQHLQRERGEGLSWAQRIRLASETADALAYLHSAINPPIYHRDVKSSNILLDYSFNSKVADFGLSRIVLTESSHISTVPQGTPGYLDPQYHQNFHLS

Protein Length: 323

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCAGCTTGGATGGTGGATTGAAGGTGATTGTTCAAACAAGTGCTCAACAAACGGGAATTGCACACAGTTCGTTTCTCCAAACACAGGCAATCCAGTGCATAAATGCTCCTGTAATGACGGCTTCGTTGGAGATGGATATTTACAGGGCGATGGATGTCGCAAAGAGAAGTGTAATCCTTTGACTGAACATTGTGGCGGGGTGACTGGAGTGGCTGTTCTCGTCGGAGGGTTAAGTGCAGGGGCGACATTGGTGGTGGTGATAGTCCTGCTATACTGCTTCTTCAAGAAGAAGGCTCTGGCAAACGAAAGGAGGAGGAGCCGAAAGAAACTCCTCTCGGCCAACGGTGGATCCTTCGGAATCCCAATTTTCACATACAAGGAGCTGGAGAAGGCCACAAAGGGCTTCTCCGAAGAAGAAAGATTGGGAAATGGCGCGTTTGGAACGGTCTATGCCGGGAAACTCAAAGGCGACTGTCCCGTGGCCGTCAAAAAGATCAGACATATCGACACCCATGGAATCGAACAGATGATGAACGAAATAAAGCTTCTGTCATCTGTGGAACATCCAAACCTGGTGCGTCTGATGGGCTGCTGCCTTGAGAATGGAGAGCCCATACTCGTCTACGAGTACATGCCCAACGGAACTCTTGGTCAGCACCTACAGCGCGAGAGGGGCGAGGGGCTATCCTGGGCGCAGAGAATCAGGCTGGCATCCGAGACCGCGGACGCCCTGGCTTACCTTCACTCGGCTATAAACCCGCCAATTTATCATAGGGATGTAAAATCCAGCAACATTTTACTGGACTACAGCTTCAATTCAAAAGTAGCGGATTTCGGGCTCTCAAGGATTGTTTTAACAGAATCCTCGCACATATCCACGGTCCCGCAGGGAACCCCGGGTTACCTGGACCCACAATACCACCAGAACTTCCACCTCTCC

Fln Alignment:

sp_v1.1_unigene17785___GGSFGIP-IFTYKELEKATKGFSEEERLGNGAFGTVYAGKLKGDCPVAVKKIRHIDTHGIEQMMNEIKLLSSVEHPNLVRLMGCCLENGEPILVYEYMPNGTLGQHLQRERGEGLSWAQRIRLASETADALAYLHSAINPPIYHRDVKSSNILLDYSFNSKVADFGLSRIVLTESSHISTVPQGTPGYLDPQY
C0PRI9_______________GISLGISRTFTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPNMEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKLASEDFTHVSTRVMGTFGYLAPEY

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
303		83		16	0.994512
616		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain