SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17784

Length: 391 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene17784
GATTTGGTGAAGAAGAATATAGAAATATTTCCGAGTTTAGGGAAGTTGCAGAAAAGCTATCGAGCAGCCAATGCATCACTCAAGAATAGAGGCCATGACATTATGGTGAGATGGGCAGAGGGAGCAGGAACAATACGCATAGATGGTACGAGCTTTACTCTGGTCCAATGCCATTGGCATTCTCCTGCTGAGCACACTATCAATGGTAGACGATATCCTTTGGAGATACATATGGTACATAAATCTGTTGACAACCAAACGGTTGTTATTGGGATATTATACAAATATGGAAGACATGATACTTTCCTTGCAGAGTTGATGAATAAAATGGCATCCCTCAGTCATGAGATGGAACCGGGGGCAGAGGAAGCTTTGGGNGTTATAGATCCCA

Ace file of the UniGene sp_v1.1_unigene17784

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	carbonic anhydrase, putative (EC:4.2.1.1)	-	-	2.0e-34	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	2.59379e-38	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Carbonate dehydratase.	EC:4.2.1.1	-	2.59379e-38	72%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Nitrogen metabolism	00910		2.59379e-38	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	one-carbon metabolic process	GO:0006730	Biological Process	2.59379e-38	72%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	2.59379e-38	72%
Blast2go	carbonate dehydratase activity	GO:0004089	Molecular Function	2.59379e-38	72%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Alpha carbonic anhydrase	IPR001148	-	2.59379e-38	72%
Blast2go	Carbonic anhydrase, alpha-class	IPR023561	-	2.59379e-38	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NP26

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 130 - 271

Fln protein: DLVKKNIEIFPSLGKLQKSYRAANASLKNRGHDIMVRWAEGAGTIRIDGTSFTLVQCHWHSPAEHTINGRRYPLEIHMVHKSVDNQTVVIGILYKYGRHDTFLAELMNKMASLSHEMEPGAEEALGVIDP

Protein Length: 131

Fln nts: GATTTGGTGAAGAAGAATATAGAAATATTTCCGAGTTTAGGGAAGTTGCAGAAAAGCTATCGAGCAGCCAATGCATCACTCAAGAATAGAGGCCATGACATTATGGTGAGATGGGCAGAGGGAGCAGGAACAATACGCATAGATGGTACGAGCTTTACTCTGGTCCAATGCCATTGGCATTCTCCTGCTGAGCACACTATCAATGGTAGACGATATCCTTTGGAGATACATATGGTACATAAATCTGTTGACAACCAAACGGTTGTTATTGGGATATTATACAAATATGGAAGACATGATACTTTCCTTGCAGAGTTGATGAATAAAATGGCATCCCTCAGTCATGAGATGGAACCGGGGGCAGAGGAAGCTTTGGGaGTTATAGATCCCA

Fln Alignment:

sp_v1.1_unigene17784___DLVKKNIEIFPSLGKLQKSYRAANASLKNRGHDIMVRWAEGAGTIRIDGTSFTLVQCHWHSPAEHTINGRRYPLEIHMVHKSVDNQTVVIGILYKYGRHDTFLAELMNKMASLSHEMEPGAEEALGVIDP
A9NP26_______________DVVKRNAIISPNLGTLHRIYHPANATLVNRGHDIMVNWSEGAGSVEIKGKRFTLKQCHWHTPAEHTIDGKQHPLEIHLVHQAVDGEIAVIGIIFEFGRPDTFLAELRDAIMAIAH-MEPPV-KPLGMVDP

SNPs (tot: 3)

Position	A %	G %	T %	Probability
119	88	11		0.923564
350	20		80	0.995493
352	20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain