SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17771

Length: 363 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene17771
CGTCGTGACCTTGGCTGTCACTACACTTGGAGGGAACAACATGGGTCAGAGGATAGATAATCTTACAGAAGTGGAAGATGTAAAGAGATTTTATCTCCAGTACACTTTCCCACCATCATGTGTAGGAGAAGTAGGACGTATAGGAGCTCCAAGCAGGAGGGAAATTGGTCATGGAATGCTATCAGAAAGAGCTCTTGAACTAGCACTTCCTTCAGAAGAAGAATTTCCCTATATAGTCCGTGTTGAGAGTACTATAACAGAAAGCAATGGTTCTTCAAGCATGGCTTCCATTTGTGGAGGTTGCTTGGCAATGCTTGATGCAGGAGTTCCCTTAAAATGTTCTATAGCTGGAGTTGCAATGGG

Ace file of the UniGene sp_v1.1_unigene17771

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Polynucleotide phosphorylase n=1 Tax=Pisum sativum RepID=O24288_PEA	-	-	79%
FL-Next	tr=Polynucleotide phosphorylase; Pisum sativum (Garden pea).	-	-	79%
Blast2go	polynucleotide phosphorylase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polyribonucleotide nucleotidyltransferase.	EC:2.7.7.8	-	0.0	85%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	85%
Blast2go	Pyrimidine metabolism	00240		0.0	85%

Source	GOs	Term	Type	Identity
Blast2go	RNA processing	GO:0006396	Biological Process	85%
Blast2go	xanthophyll biosynthetic process	GO:0016123	Biological Process	85%
Blast2go	chlorophyll biosynthetic process	GO:0015995	Biological Process	85%
Blast2go	mRNA catabolic process	GO:0006402	Biological Process	85%
Blast2go	negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway	GO:0010323	Biological Process	85%
Blast2go	carotene biosynthetic process	GO:0016120	Biological Process	85%
Blast2go	RNA binding	GO:0003723	Molecular Function	85%
Blast2go	polyribonucleotide nucleotidyltransferase activity	GO:0004654	Molecular Function	85%
Blast2go	3'-5'-exoribonuclease activity	GO:0000175	Molecular Function	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%

Source	InterPros	Term	Type	Identity
Blast2go	Exoribonuclease, phosphorolytic domain 1	IPR001247	-	85%
Blast2go	Polyribonucleotide nucleotidyltransferase	IPR012162	-	85%
Blast2go	Ribosomal protein S5 domain 2-type fold	IPR020568	-	85%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: O24288

Fln msg: Distance to subject end: 300 aas, your sequence is shorter than subject: 120 - 897

Fln protein: VVTLAVTTLGGNNMGQRIDNLTEVEDVKRFYLQYTFPPSCVGEVGRIGAPSRREIGHGMLSERALELALPSEEEFPYIVRVESTITESNGSSSMASICGGCLAMLDAGVPLKCSIAGVAM

Protein Length: 121

Fln nts: CGTCGTGACCTTGGCTGTCACTACACTTGGAGGGAACAACATGGGTCAGAGGATAGATAATCTTACAGAAGTGGAAGATGTAAAGAGATTTTATCTCCAGTACACTTTCCCACCATCATGTGTAGGAGAAGTAGGACGTATAGGAGCTCCAAGCAGGAGGGAAATTGGTCATGGAATGCTATCAGAAAGAGCTCTTGAACTAGCACTTCCTTCAGAAGAAGAATTTCCCTATATAGTCCGTGTTGAGAGTACTATAACAGAAAGCAATGGTTCTTCAAGCATGGCTTCCATTTGTGGAGGTTGCTTGGCAATGCTTGATGCAGGAGTTCCCTTAAAATGTTCTATAGCTGGAGTTGCAATGGG

Fln Alignment:

sp_v1.1_unigene17771___LAVTTLGGNNMGQRIDNLTEVEDVKRFYLQYTFPPSCVGEVGRIGAPSRREIGHGMLSERALELALPSEEEFPYIVRVESTITESNGSSSMASICGGCLAMLDAGVPLKCSIAGVAM
O24288_______________LAVATLGDNKMAQRINNLIEVDDYKRFYLQYSFPPSCVGEAGRIGAPSRREIGHGMLAERSLETILPSDNDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKCSIAGIAM

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
95		85		14	0.993533
187	85		14		0.993533
206		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain