SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17738

Length: 1655 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17738

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA ligase n=2 Tax=Selaginella moellendorffii RepID=D8RMH0_SELML	-	-	76%
FL-Next	sp=DNA ligase 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Blast2go	dna ligase	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA ligase (ATP).	EC:6.5.1.1	-	0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	83%
Blast2go	DNA replication	GO:0006260	Biological Process	83%
Blast2go	DNA recombination	GO:0006310	Biological Process	83%
Blast2go	DNA repair	GO:0006281	Biological Process	83%
Blast2go	DNA binding	GO:0003677	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	DNA ligase (ATP) activity	GO:0003910	Molecular Function	83%
Blast2go	nucleus	GO:0005634	Cellular Component	83%
Blast2go	plastid	GO:0009536	Cellular Component	83%
Blast2go	mitochondrion	GO:0005739	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Blast2go	DNA ligase, ATP-dependent	IPR000977	-	83%
Blast2go	DNA ligase, ATP-dependent, N-terminal	IPR012308	-	83%
Blast2go	DNA ligase, ATP-dependent, C-terminal	IPR012309	-	83%
Blast2go	DNA ligase, ATP-dependent, central	IPR012310	-	83%
Blast2go	Nucleic acid-binding, OB-fold	IPR012340	-	83%
Blast2go	Nucleic acid-binding, OB-fold-like	IPR016027	-	83%
Blast2go	DNA ligase, ATP-dependent, conserved site	IPR016059	-	83%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q42572

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 551 - 790

Fln protein: VSVVYLSANKVAPAHEGVELGIGDASIIKALAEAFGRKEAQVKSQMKSLGDLGLVAKASRSTQMLMVKPTPLTCVKVLECFRFIAKESGKESQDKKRARIKSLLVAATDCEPQYLVRLLQAKMRIGLAEQTVLVALGYAAVYSDELPVAQSRLEEAGRIVKQVYSVLPIYDKIVPVLLDVGVVKLPEVCTFTLGVPIGPMLAKPTKGVSEILDKFQDIKFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDIVDFIGRCKKPSAKSFVLDTEVVAFDREKQKILPFQVLSTRARKGVIVSDIKVQVCIFAFDLLYLNDRQLLQEQLKVRREFLYDSFQEEAGKFQFATATESNDIEEMQKFLQEAVNSSCEGLIIKTLEQDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDEDTEEFQSVCKIGTGFTEVMLEERSDSLRNKVIPKPKPYYRYGETLGVDVWFEPSEVWEVKAADLSISPVHRAAAGVVDPNKGISLRFPRLLRVREDKNPDQATTAEQVA

Protein Length: 552

Fln nts: GTGTCAGTGGTTTATCTTTCCGCGAATAAAGTGGCTCCTGCACACGAGGGGGTGGAGCTTGGAATTGGGGATGCTTCCATTATTAAAGCCCTTGCTGAGGCTTTTGGGAGAAAGGAAGCCCAGGTCAAGAGCCAGATGAAGTCCTTGGGTGACTTGGGTCTTGTTGCAAAGGCAAGTCGTTCAACTCAGATGTTGATGGTCAAGCCAACTCCTTTAACTTGTGTAAAGGTTCTTGAATGCTTTCGTTTCATTGCTAAGGAATCTGGGAAGGAAAGTCAAGACAAGAAGAGGGCACGCATAAAGTCTCTTCTTGTAGCAGCAACAGACTGTGAACCCCAGTACTTGGTTCGCCTTCTTCAGGCAAAAATGCGTATAGGATTGGCAGAACAAACTGTCTTAGTTGCATTGGGATATGCAGCTGTGTATTCTGATGAGCTGCCAGTTGCCCAGTCCCGACTTGAAGAGGCTGGCAGGATAGTGAAGCAAGTTTACTCAGTCTTGCCAATATATGATAAAATTGTTCCGGTTTTGCTTGATGTGGGTGTTGTCAAGTTGCCTGAAGTTTGTACATTTACCTTGGGGGTGCCTATTGGTCCTATGTTGGCCAAACCTACGAAAGGAGTTTCGGAGATTTTGGATAAATTTCAGGATATAAAGTTTACTTGTGAGTATAAATATGATGGGGAGCGTGCACAGATTCACTACATGGAAGATGGGTCTGTTGAGATTTACAGTCGGAATGCTGAACGCAATACTGGGAAGTTTCCAGATATTGTAGATTTTATTGGAAGATGCAAGAAGCCATCTGCGAAATCATTTGTTTTGGATACTGAAGTTGTTGCATTTGATCGGGAGAAGCAAAAAATCTTACCTTTCCAGGTTTTGAGCACTCGTGCCCGAAAAGGTGTTATAGTTAGTGACATCAAAGTGCAAGTTTGTATTTTTGCTTTTGACCTTTTATATCTTAATGACCGACAACTTTTACAAGAACAACTAAAAGTGCGAAGAGAGTTCTTGTATGATTCTTTTCAAGAGGAAGCAGGAAAATTCCAATTTGCAACTGCAACGGAATCAAATGATATAGAAGAAATGCAGAAATTTCTTCAAGAAGCTGTAAACAGTAGTTGTGAAGGTTTAATTATCAAAACACTGGAGCAAGATGCAACATATGAGCCTGCAAAGCGGTCTAATAACTGGTTGAAGTTGAAGAAAGATTATATGGACAGTATTGGGGATTCATTAGATCTTGTACCAATAGGGGCATTCCATGGTCGTGGAAAGCGTACAGGGGTTTATGGTGCTTTTCTTCTTGCGTGCTATGATGAAGATACAGAAGAGTTTCAAAGTGTGTGTAAAATAGGCACAGGATTTACTGAAGTAATGCTTGAAGAGCGTTCTGACAGTTTGCGGAATAAAGTCATCCCAAAGCCAAAGCCTTATTATCGCTATGGAGAGACATTAGGAGTAGATGTTTGGTTTGAGCCTTCAGAGGTATGGGAGGTCAAAGCTGCTGATTTAAGCATTAGCCCTGTTCATCGTGCAGCAGCTGGTGTGGTTGATCCTAACAAGGGTATTTCTCTTCGATTTCCACGTTTACTACGGGTTCGTGAAGACAAGAATCCAGATCAAGCGACTACTGCAGAGCAGGTCGCAGA

Fln Alignment:

sp_v1.1_unigene17738___VSVVYLSANKVAPAHEGVELGIGDASIIKALAEAFGRKEAQVKSQMKSLGDLGLVAKASRSTQMLMVKPTPLTCVKVLECFRFIAKESGKESQDKKRARIKSLLVAATDCEPQYLVRLLQAKMRIGLAEQTVLVALGYAAVYSDEL----PVAQSRLEEAGRIVKQVYSVLPIYDKIVPVLLDVGVVKLPEVCTFTLGVPIGPMLAKPTKGVSEILDKFQDIKFTCEYKYDGERAQIHYMEDGSVEIYSRNAERNTGKFPDIVDFIGRCKKPSAKSFVLDTEVVAFDREKQKILPFQVLSTRARKGVIVSDIKVQVCIFAFDLLYLNDRQLLQEQLKVRREFLYDSFQEEAGKFQFATATESNDIEEMQKFLQEAVNSSCEGLIIKTLEQDATYEPAKRSNNWLKLKKDYMDSIGDSLDLVPIGAFHGRGKRTGVYGAFLLACYDEDTEEFQSVCKIGTGFTEVMLEERSDSLRNKVIPKPKPYYRYGETLGVDVWFEPSEVWEVKAADLSISPVHRAAAGVVDPNKGISLRFPRLLRVREDKNPDQATTAEQVA
Q42572_______________VATVYLSANEIAPAHEGVELGIGESTIIKAISEAFGRTEDHVKKQNTELGDLGLVAKGSRSTQTMMFKPEPLTVVKVFDTFRQIAKESGKDSNEKKKNRMKALLVATTDCEPLYLTRLLQAKLRLGFSGQTVLAALGQAAVYNEEHSKPPPNTKSPLEEAAKIVKQVFTVLPVYDIIVPALLSGGVWNLPKTCNFTLGVPIGPMLAKPTKGVAEILNKFQDIVFTCEYKYDGERAQIHFMEDGTFEIYSRNAERNTGKYPDVALALSRLKKPSVKSFILDCEVVAFDREKKKILPFQILSTRARKNVNVNDIKVGVCIFAFDMLYLNGQQLIQENLKIRREKLYESFEEDPGYFQFATAVTSNDIDEIQKFLDASVDVGCEGLIIKTLDSDATYEPAKRSNNWLKLKKDYMDSIGDSVDLVPIAAFHGRGKRTGVYGAFLLACYDVDKEEFQSICKIGTGFSDAMLDERSSSLRSQVIATPKQYYRVGDSLNPDVWFEPTEVWEVKAADLTISPVHRAATGIVDPDKGISLRFPRLLRVREDKKPEEATSSEQIA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
407	66		33		1.0
437	33		66		1.0
1250		33	66		0.997452
1251	66		33		0.997452
1254			33	66	0.997452
1262	66			33	0.997452
1264	66		33		0.997452
1267			66	33	0.997452
1269			66	33	0.997452
1272		33		66	0.997452
1275	33	66			0.997452
1298	33		66		1.0
1323	50		50		1.0
1387	42		57		1.0
1407		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain