SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17729

Length: 657 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17729 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	germin-like protein 3	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	52%
Blast2go	germin-like protein 1	-	-	73%

Source	GOs	Term	Type	Identity
Blast2go	manganese ion binding	GO:0030145	Molecular Function	73%
Blast2go	nutrient reservoir activity	GO:0045735	Molecular Function	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Blast2go	Germin	IPR001929	-	73%
Blast2go	Cupin 1	IPR006045	-	73%
Blast2go	Cupin, RmlC-type	IPR011051	-	73%
Blast2go	RmlC-like jelly roll fold	IPR014710	-	73%
Blast2go	Germin, manganese binding site	IPR019780	-	73%

Full-Lengther Next Prediction

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
135		75		25	0.996473
238		50		50	1.0
256		50		50	1.0
377	25		75		0.996473
402		25		75	0.996473
439	60			40	1.0
524	75		25		0.996473
557	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain