SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17724

Length: 942 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17724 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	si946044e03; LOC100286132; K13960 ubiquitin-conjugating enzyme E2 T [EC:6.3.2.19]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	ubiquitin-conjugating enzyme	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	71%

Source	GOs	Term	Type	Identity
Blast2go	regulation of protein metabolic process	GO:0051246	Biological Process	77%
Blast2go	post-translational protein modification	GO:0043687	Biological Process	77%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	77%

Source	InterPros	Term	Type	Identity
Blast2go	Ubiquitin-conjugating enzyme, E2	IPR000608	-	77%
Blast2go	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	77%
Blast2go	Ubiquitin-conjugating enzyme, active site	IPR023313	-	77%

Full-Lengther Next Prediction

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
210			12	87	0.992554
212			12	87	0.992554
217	12		87		0.992554
224		12		87	0.992554
225		37	12	50	1.0
227		12		87	0.992554
228			12	87	0.992554
361		57		42	1.0
362			42	57	1.0
364			42	57	1.0
367	42			57	1.0
368		42	57		1.0
369	42	57			1.0
370			42	57	1.0
371		42		57	1.0
372	14	42	42		1.0
373	42			57	1.0
375			28	42	1.0
376			28	28	1.0
379	42			57	1.0
380		42	57		1.0
381		57	42		1.0
384			42	57	1.0
490		66		33	0.997452
833		12		87	0.992554
834	12			87	0.992554
836		87	12		0.992554
837	87			12	0.992554
902	60	40			1.0
903		50	50		1.0
904		50		50	1.0
905		50	50		1.0
907	60			40	1.0
922		66		33	0.997452
923		66		33	0.997452
928	66	33			0.997452
934	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain