SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17704

Length: 324 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene17704
GAAAGAGATATGGCCTATAGCTCGACATGGTTGGCACAGCTAGATCCTAAAAAAGATGAGGTACATGTTCCAGTGTGGTTCTGTCAGGGTGCACTAAAAAGACCACCACCATCTGTTCCTCTAGTTCTGGTTGGACCAGGAACAGGCTGTGCACCATTTCGGGCTTTAATTGAAGACCGAGCAATTTTAAGTGCAGATGAACCTGCAGCTCCTATTCTTTTCTTCTTTGGCTGTAGAAATGAAACCAAAGATTTCCTATACAAAGATTTCTGGTTTTCACATATGAAAAACTGTAAAGTATTGTCAGAGCAAAAAGGTGGTGGA

Ace file of the UniGene sp_v1.1_unigene17704

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nadph-cytochrome P450 oxydoreductase n=1 Tax=Populus trichocarpa RepID=B9H2Y5_POPTR	-	-	8.0e-24	52%
FL-Next	sp=NADPH--cytochrome P450 reductase; Pseudotsuga menziesii (Douglas-fir) (Abies menziesii).	-	-	0.0	43%
Blast2go	nadph-cytochrome p450 oxydoreductase	-	-	1.40568e-23	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	oxidoreductase activity	GO:0016491	Molecular Function	1.40568e-23	74%
Blast2go	binding	GO:0005488	Molecular Function	1.40568e-23	74%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oxidoreductase FAD/NAD(P)-binding	IPR001433	-	1.40568e-23	74%
Blast2go	Flavoprotein pyridine nucleotide cytochrome reductase	IPR001709	-	1.40568e-23	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q40916

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 108 - 719

Fln protein: ERDMAYSSTWLAQLDPKKDEVHVPVWFCQGALKRPPPSVPLVLVGPGTGCAPFRALIEDRAILSADEPAAPILFFFGCRNETKDFLYKDFWFSHMKNCKVLSEQKGGG

Protein Length: 109

Fln nts: GAAAGAGATATGGCCTATAGCTCGACATGGTTGGCACAGCTAGATCCTAAAAAAGATGAGGTACATGTTCCAGTGTGGTTCTGTCAGGGTGCACTAAAAAGACCACCACCATCTGTTCCTCTAGTTCTGGTTGGACCAGGAACAGGCTGTGCACCATTTCGGGCTTTAATTGAAGACCGAGCAATTTTAAGTGCAGATGAACCTGCAGCTCCTATTCTTTTCTTCTTTGGCTGTAGAAATGAAACCAAAGATTTCCTATACAAAGATTTCTGGTTTTCACATATGAAAAACTGTAAAGTATTGTCAGAGCAAAAAGGTGGTGGA

Fln Alignment:

sp_v1.1_unigene17704___TGCAPFRALIEDRA-ILSADEPAAPILFFFGCRNETKDFLYKDFWFSHMKN
Q40916_______________TGLAPFRGFLQERAAIQKSGEKLGPAVLFFGCRNRQMDYIYEDELKSYVEN

SNPs (tot: 4)

Position	C %	G %	T %	Probability
124		85	14	0.993533
125		14	85	0.993533
126		14	85	0.993533
127	85	14		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain