SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17681

Length: 747 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17681 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to 3-oxoacyl-[acyl-carrier-protein] synthase	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	3-oxoacyl-synthase i	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-ketoacyl-acyl-carrier-protein synthase I.	EC:2.3.1.41	-	0.0	89%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		0.0	89%
Blast2go	Metabolic pathways	01100		0.0	89%

Source	GOs	Term	Type	e value	Identity
Blast2go	fatty acid biosynthetic process	GO:0006633	Biological Process	0.0	89%
Blast2go	3-oxoacyl-[acyl-carrier-protein] synthase activity	GO:0004315	Molecular Function	0.0	89%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
255		20		80	0.995493
256	80			20	0.995493
267		20	80		0.995493
345	75		25		0.996473
352	75			25	0.996473
399	66	33			1.0
403	16	83			0.994512
404	16	83			0.994512
405	83		16		0.994512
406		83	16		0.994512
409	83	16			0.994512
412		16		83	0.994512
413	83		16		0.994512

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain