SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17673

Length: 1798 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17673

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Small basic intrinsic protein 1-2 n=1 Tax=Olea europaea RepID=B5KGP0_OLEEU	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mip sip subfamily	-	-	75%

Source	GOs	Term	Type	Identity
Blast2go	transport	GO:0006810	Biological Process	75%
Blast2go	transporter activity	GO:0005215	Molecular Function	75%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	75%
Blast2go	integral to membrane	GO:0016021	Cellular Component	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major intrinsic protein	IPR000425	-	0.0	75%
Blast2go	Aquaporin-like	IPR023271	-	0.0	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNF2

Fln msg:

Fln protein: MGIVKLAIGDAAITFLWVFGASCLGAGTSVIASYLGVQGAMTLLITLSLLFLLVFLFSFLGEAMGGATWNPTALAAAFALGVGKDNLISLSIRFPAQAAGAVGGALAIMELMPASHKHMLGGPSLKVDLHKGAIAEGVLTFVISIMVFLIIMKGPKSSFWKSWLISLTTIILVLAGSGYTGPSMNPANAFGWAYVNNRHNTWEQLYVYWITPFIGSILAAWTLRLISPPNSSKKEKKA*

Protein Length: 240

Fln nts: ATGGGGATGCATGCTTATTCTATCAATCAACCAACTCGCATAATCTCCACATGTAATAGGAGAAGGGCAGTTCATACCAACAACCCACCCATTTGCATGCGGGGCATTACAAGTTTGGGATTCTGTTGCAGCTGCAGATCCATCTTTCTCCCAGAGAAAAC_-_ATGGGGATTGTGAAGCTCGCAATCGGGGATGCTGCAATAACGTTTCTGTGGGTGTTTGGCGCATCATGCCTGGGAGCAGGGACTTCGGTAATAGCCTCGTATTTAGGTGTGCAGGGGGCCATGACTCTACTTATAACCCTCTCCCTGTTGTTTCTACTTGTGTTTCTGTTCTCCTTTTTAGGAGAGGCCATGGGTGGAGCTACTTGGAATCCCACTGCCTTAGCTGCTGCTTTTGCTTTGGGCGTTGGCAAGGATAACTTGATAAGTTTGTCCATTCGATTCCCTGCCCAGGCAGCTGGAGCTGTAGGTGGGGCCTTGGCAATCATGGAGCTCATGCCTGCATCGCACAAACACATGCTTGGAGGCCCTTCGCTAAAGGTTGATTTGCATAAAGGAGCGATTGCAGAAGGAGTGTTGACATTCGTGATTAGTATAATGGTTTTTCTTATTATTATGAAAGGACCAAAAAGCTCCTTCTGGAAGTCATGGTTGATATCATTAACAACCATTATATTAGTCTTGGCAGGTTCTGGGTATACGGGACCATCCATGAACCCAGCAAATGCATTTGGTTGGGCATATGTCAATAATCGACACAATACATGGGAGCAACTGTATGTCTATTGGATTACTCCCTTCATCGGATCCATTTTAGCAGCTTGGACTTTAAGACTCATTTCTCCACCCAATTCATCGAAAAAGGAGAAGAAAGCTTAA___ACATGTCTTTACACAAATTATCTACCTTTTCTTTCTTCAGAATTAAAGTAGAATTAGAATGTACTGAGGATAATTCAGCTAAAAATTGTCACATTTGGTTTTTGATAAATTGGGCTTTCCATAACACCATGGCTGCGAAGGTGAGCAGTTATTTGTAATCAAATTTATGACTTCTGCTATTTATTTGATCTTAGTTCCTAACAGTATCTGTCTGAATGGAAAAGGGCAAACTTCAAAGCGAATCTGCATATCCCGCGAGACTGAAATCTCCAAAACGAGTTCATTCTTCTGAGTCCTTCATGCTTGCTTAAAATGACACGCTATTTGGCATTGCAGCAAAAGAATATCGTTGTATATTTTTGCAAGTTCTCTTTATCATTGTTAAAAATCATGGTTGCACGGGTACTTCTAGTCCCCAGGGCATCCCCGTACCCACCATATTGGGTATCCTAATGGTCCTCTACCAAGGAAAATTGATGTACCCATGTGCCCATGGTTCAAACAGATTCATCCTTTTTGCACCTGCACCCACACCTACCTATGCACACATAGGTGAAAAACAGTGCTTCATCTTCTTTTATCACATTGACTGGGACATCTCTTATATTATAGGAGCATCGGTTGAGCTGGCTTACGTTCGTAAGTGCATCGCTTTTGTACTTTAATATATTAGCCAAACTTGCACTGTTTGGGGTCTGGCAGGAGGAAGGATACAGTTGCATCAATTCATGAAATTAAACATAGTAGCAGTTACATTAGAAAAAGAGATGAAATAAATATATGCTTCCAGTAATGTACGAAGCATGCAGATTTGGTATATCAAAATTTACTGGCATAATATTAGTGATGCCAAAAGCTGAAAAAAATCCTGAGGCGCCTTCAACACTCTGTTCATGAAGAAACAGAGCAACAGAGAGTTA

Fln Alignment:

sp_v1.1_unigene17673___MGIVKLAIGDAAITFLWVFGASCLGAGTSVIASYLGVQGAMXXXXXXXXXXXXXXXXXXXGEAMGGATWNPTALAAAFALGVGKDNLISLSIRFPXXXXXXXXXXXXIMELMPASHKHMLGGPSLKVDLHKGAIAEGVLTFVISIMVFLIIMKGPKSSFWKSWLISLTTIILVLAGSGYTGPSMNPANAFGWAYVNNRHNTWEQLYVYWITPFIGSILAAWTLRLISPPNSSKKEKKA
A9NNF2_______________MGIVKLAIGDAAITFLWVFGASCLGAGTSIIASNLGVQGPMTLLITTSLLFLLVFLFSFLGQVMGGATWNPTASAAAFALGVGNDNLISMSIRFPAQAAGAVGGALAIMELMPASYKHMLGGPSLKVDLHRGAIAEGVLTFLISFMVLLIIMKGPKSSFWKSWMISLVTIILVLAGSGYTGPSMNPANAFGWAYVNNRHNTWEQLYVYWITPFIGSILAAWILRLISPPGSSKKEKKA

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
120	75	25			0.996473
121			25	75	0.996473
126	25			75	0.996473
127		25		75	0.996473
128		25	75		0.996473
129		75		25	0.996473
130	75			25	0.996473
134			75	25	0.996473
138	75	25			0.996473
141	25	75			0.996473
1229		18		81	0.999994
1233			18	81	0.999994
1235		18		54	1.0
1236		18		54	1.0
1239			18	81	0.999994
1244	81			18	0.999994
1249	18			81	0.999994
1252		18		81	0.999994
1253	18			81	0.999994
1280	10		90		0.90298
1291			80	20	0.999996
1503			80	20	1.0
1570	11		77		0.968132

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain