SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17670

Length: 1285 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17670

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA polymerase n=1 Tax=Ricinus communis RepID=B9SC90_RICCO	-	-	59%
FL-Next	sp=DNA polymerase alpha catalytic subunit; Oryza sativa subsp. japonica (Rice).	-	-	55%
Blast2go	dna polymerase alpha catalytic	-	-	69%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed DNA polymerase.	EC:2.7.7.7	-	0.0	69%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	69%
Blast2go	Pyrimidine metabolism	00240	69%
Blast2go	Metabolic pathways	01100	69%

Source	GOs	Term	Type	Identity
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	69%
Blast2go	DNA-dependent DNA replication initiation	GO:0006270	Biological Process	69%
Blast2go	lagging strand elongation	GO:0006273	Biological Process	69%
Blast2go	DNA-directed DNA polymerase activity	GO:0003887	Molecular Function	69%
Blast2go	DNA primase activity	GO:0003896	Molecular Function	69%
Blast2go	DNA binding	GO:0003677	Molecular Function	69%
Blast2go	3'-5' exonuclease activity	GO:0008408	Molecular Function	69%
Blast2go	nucleus	GO:0005634	Cellular Component	69%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: O48653

Fln msg: your sequence is shorter than subject: 308 - 1534

Fln protein: GSTTGIAERARHPDELKRDSGNWMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCPHCSSSFECPSVASIIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPSVISPAILANQVKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGDMERGTVCPNYPRCNGHLVQQYTEVDLYKQLTYFCHILDIQRVIQKFEYNARMPAEKRLAKIRPAIDAAAMTIRKIRDRCAYGWVQLNDIVVSV*

Protein Length: 309

Fln nts: TGGGATCAACAACAGGCATTGCCGAAAGGGCAAGACATCCAGATGAGTTGAAAAGGGACAGTGGAAACTGGATGATTGACATTGATTATTATCTATCTCAGCAGATTCATCCTGTTGTGTCTAGATTATGTGCACCTATCCAAGGTACAAGCCCAGGACGTCTTGCAGATTGTCTTGGATTGGACTCATCGAAGTTTGAACCAAAAATGAGTTTTGAAGCTGTTGCGAAAGAGCCAGCTACTGCATTTCTCTCCAGTCTTCATGATGATGATGATGAAAGATACCATGACTGCGAACCATTCTTGATAGTATGCCCACATTGTTCCTCAAGTTTTGAATGTCCTAGTGTCGCAAGCATAATTAAAAGTTCTGAAAATCTTACAACCAACTCCGGAGAAAATGAACAAGATGAAACATTATCCAAGACATCAAGGGAGGCAACTGAGAAATATTGGTGCTCACTCCATTGTCCAAAATGTCAAGATGAGGGTGTACCAAGTGTAATTTCTCCTGCCATACTAGCTAATCAGGTGAAAAGGCAGGCAGAAAAATTCATCGCATTGTACTATACAGGGTTAATGATTTGTGATGAAGAAATGTGCAAGCACACAACTAGAAACTTGAACTTGCGGGTTATCGGTGATATGGAAAGGGGAACAGTTTGTCCAAATTATCCTCGCTGCAATGGACATCTTGTCCAACAGTACACCGAGGTAGACCTGTACAAGCAGCTTACATACTTCTGCCACATACTTGACATTCAGCGCGTGATTCAAAAGTTTGAGTATAATGCAAGAATGCCAGCAGAGAAACGCCTTGCCAAAATACGACCTGCAATTGATGCTGCAGCTATGACTATTCGCAAAATAAGAGATCGTTGCGCATATGGATGGGTGCAACTTAATGATATTGTAGTCAGCGTCTAA___CTTCTGTCAAATCAATTTACATGCAGCACTTCATGTTTTATATCTTTTGTACTTGCAAGGGCATTGCACATGTTTTTTATCATTAGTTCATGTGCACATAGGGTTTCCCCACATCCGGTATATAGCTGATATGAACAGCAGTTAGATCTTTGGAGGTACCCCTCCATGCTGATGAGTGGATTTTTTACATTATGCCCTTGGAGTGAGTATTGAGCAGATTGGTTATCGTCGCTGAAGCACCAATTCTAAAATTCTGCAAGTGGCTGTCTTGTATTATAGTGATTTGTAACTATTTCAGCACATGTACACAAGTTAATGTCATTGAAATTTCTACCATATGCCAAGTGCAAGTTTTGTAT

Fln Alignment:

sp_v1.1_unigene17670___GIAERARHPDELKRDSGNWMIDIDYYLSQQIHPVVSRLCAPIQGTSPGRLADCLGLDSSKFEPKMSFEAVAKEPATAFLSSLHDDDDERYHDCEPFLIVCPHCSSSFECPSVAS-IIKSSENLTTNSGENEQDETLSKTSREATEKYWCSLHCPKCQDEGVPSVISPAILANQVKRQAEKFIALYYTGLMICDEEMCKHTTRNLNLRVIGDMERGTVCPNYPRCNGHLVQQYTEVDLYKQLTYFCHILDIQRVIQKFEYNARMPAEKRLAKIRPAIDAAAMTIRKIRDRCAYGWVQLNDIVVSV
O48653_______________GIAQRARHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGTSPARLAECLGLDSSKFQSRLTESD--NQDTSSMLLSVIDDEDERYRGCEPLRLSCPSCSTTFDCPPVSSLIIGSSSGNVSNPNEGN----------DASINFWRRMRCPRCPDDTDESRVSPAVLANQMKRQADSFINLYYKGLLMCDDEGCKYSTHSVNLRVMGDSERGTICPNYPRCNGHLVRQYTEADLYRQLSYFCYVVDATRCLEKLDQKARLPFEKEFAALSQTINLALMEVQKIRDRCAFGWVQLKDLAISI

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
28		40	60		1.0
30			40	60	1.0
32	40		60		1.0
33	40			60	1.0
37	40	60			1.0
40		40		60	1.0
41	40		60		1.0
43	40	60			1.0
47			40	60	1.0
48		40		60	1.0
49	40			60	1.0
50		40	60		1.0
51	40			60	1.0
52	40	60			1.0
570	88		11		0.923564
571		88	11		0.923564
572	87		12		0.992554
731			80	6	0.999961
734		14	7	78	0.999974

SSRs (tot: 1)

Start position	End position	Sequence	Length
262	277	ATG ATG ATG ATG ATG A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain