SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17668

Length: 974 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17668

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Response regulator 1 n=1 Tax=Pinus pinea RepID=C0LLL0_PINPI	-	-	8.0e-33	57%
FL-Next	tr=Response regulator 1; Pinus pinea (Italian stone pine).	-	-	0.0	57%
Blast2go	type-a response regulator	-	-	1.33388e-33	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	two-component signal transduction system (phosphorelay)	GO:0000160	Biological Process	1.33388e-33	75%
Blast2go	response to cytokinin stimulus	GO:0009735	Biological Process	1.33388e-33	75%
Blast2go	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	1.33388e-33	75%
Blast2go	DNA binding	GO:0003677	Molecular Function	1.33388e-33	75%
Blast2go	two-component response regulator activity	GO:0000156	Molecular Function	1.33388e-33	75%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Signal transduction response regulator, receiver domain	IPR001789	-	1.33388e-33	75%
Blast2go	CheY-like superfamily	IPR011006	-	1.33388e-33	75%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
176		40		60	1.0
363	75	25			0.996473
429	85			14	0.993533
431	85	14			0.993533
433	14		85		0.993533
436	85		14		0.993533
437			14	85	0.993533
573		20		80	0.995493
574			20	80	0.995493
577		80	20		0.995493
578	80			20	0.995493
579		80	20		0.995493
581		20		80	0.995493
582		20		80	0.995493
583		80		20	0.995493
586			20	80	0.995493
587		20		80	0.995493
590	80			20	0.995493
591		20	80		0.995493
595	80	20			0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
878	890	TTTC TTTC TTTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain