SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17659

Length: 1250 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17659

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CESA2; CESA2 (CELLULOSE SYNTHASE A2); cellulose synthase/ transferase, transferring glycosyl groups (EC:2.4.1.12); K10999 cellulose synthase A [EC:2.4.1.12]	-	-	82%
FL-Next	tr=Cellulose synthase; Pinus radiata (Monterey pine) (Pinus insignis).	-	-	82%
Blast2go	family 2 glycosyltransferase	-	-	93%

Source	ECs	Term	Type	e value	Identity
Blast2go	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	93%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	93%

Source	ECs	Term	Type	e value	Identity
AutoFact	Cellulose synthase (UDP-forming).	EC:2.4.1.12	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Starch and sucrose metabolism	00500		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	primary cell wall biogenesis	GO:0009833	Biological Process	93%
Blast2go	cellulose biosynthetic process	GO:0030244	Biological Process	93%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	93%
Blast2go	cellulose synthase (UDP-forming) activity	GO:0016760	Molecular Function	93%
Blast2go	protein binding	GO:0005515	Molecular Function	93%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	93%
Blast2go	plasma membrane	GO:0005886	Cellular Component	93%
Blast2go	integral to membrane	GO:0016021	Cellular Component	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cellulose synthase	IPR005150	-	0.0	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q4VWW7

Fln msg: Distance to subject end: 403 aas, your sequence is shorter than subject: 416 - 1096

Fln protein: SRINPYRLIIILRLVVLGFFFQYRILHPVTDAYALWLTSVICEIWFALSWILDQFPKWLPIERETYLDRLSLRYEKEGQPSRLAAVDLFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFVQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPDEGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNSLVRVSAVLTNAPYLLNVDCDHYINNSKAIRESMCFMMDPTLGKKVCYVQFPQRFDGIDSHDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKKEKASGNTCNCCPKWCCCGCCLSRKKNRKTKPKQEK

Protein Length: 417

Fln nts: CGAGCAGAATAAATCCATACAGATTGATTATCATTCTTCGGCTTGTAGTTCTGGGCTTCTTTTTCCAATATCGAATTCTTCATCCTGTCACAGATGCATACGCGTTGTGGTTGACTTCAGTCATCTGTGAAATATGGTTTGCACTTTCCTGGATCCTTGATCAGTTTCCAAAATGGCTTCCCATTGAACGGGAAACATATCTAGACAGATTATCATTGAGGTATGAAAAGGAGGGTCAACCTTCTCGTCTTGCTGCGGTCGATCTATTTGTCAGTACTGTTGATCCATTGAAGGAACCTCCTTTAATCACTGCAAACACTGTGTTATCTATCCTTGCAGTGGATTATCCTGTAGACAAAGTTTCCTGTTATGTTTCAGATGATGGTGCAGCCATGCTAACATTTGAAGCCCTATCTGAAACTTCAGAGTTTGCAAAGAAGTGGGTTCCTTTCTGCAAGAAGTTTAACATTGAGCCCCGTGCACCAGAGTGGTACTTTGTTCAGAAGATAGACTATCTCAAGGACAAAGTACAACCTTCCTTTGTGAAAGAACGGAGGGCAATGAAGAGAGAGTATGAAGAATTCAAGGTTCGTATTAATGCTTTGGTAGCTAAAGCACAGAAGGTTCCAGATGAAGGCTGGACGATGCAGGATGGAACTCCTTGGCCTGGAAACAATGTGCGGGACCATCCAGGAATGATTCAGGTATTTTTGGGTCATAGTGGTGGGCACGACACTGATGGGAATGAACTGCCTCGCCTGGTCTATGTTTCACGTGAAAAGAGGCCTGGATTCAATCACCATAAGAAGGCTGGTGCAATGAATTCTTTGGTGCGGGTGTCAGCAGTTTTGACAAATGCTCCATATCTTTTAAATGTGGATTGCGATCATTATATAAACAACAGTAAAGCAATTCGTGAATCAATGTGTTTCATGATGGATCCCACATTGGGAAAGAAGGTCTGCTATGTGCAGTTCCCTCAGAGGTTTGATGGTATTGATAGCCATGATAGATATGCCAATCGCAATACTGTGTTCTTTGATATAAACATGAAAGGTCTGGATGGAATACAGGGACCTATATATGTTGGTACAGGTTGTGTTTTCCGAAGACAAGCTCTCTATGGATATGATGCACCCAAAAAGGAGAAGGCCTCTGGAAATACATGCAACTGCTGTCCGAAATGGTGCTGCTGTGGGTGTTGTCTGTCACGGAAGAAAAACAGGAAAACAAAACCAAAGCAAGAGAAG

Fln Alignment:

sp_v1.1_unigene17659___SRINPYXXXXXXXXXXXGFFFQYRILHPVTDAYALWLTSVICEIWFALSWILDQFPKWLPIERETYLDRLSLRYEKEGQPSRLAAVDLFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAKKWVPFCKKFNIEPRAPEWYFVQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPDEGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGGHDTDGNELPRLVYVSREKRPGFNHHKKAGAMNSLVRVSAVLTNAPYLLNVDCDHYINNSKAIRESMCFMMDPTLGKKVCYVQFPQRFDGIDSHDRYANRNTVFFDINMKGLDGIQGPIYVGTGCVFRRQALYGYDAPKKEKASGNTXXXXXXXXXXXXXLSRKKNRKTKPK
Q4VWW7_______________SKINPYRMVIVLRLVILCFFFRYRILNPVRNAYGLWFTSVICEIWFAISWILDQFPKWLPINRETYLDRLCLRYDREGEPSQLAAVDIFVSTVDPMKEPPLVTANTVLSILSVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFVKKFDIEPRAPEWYFAQKIDYLKDKVQPSFVKERRAMKREYEEFKVRINALVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFEHHKKAGAMNSLVRVSAVLTNGPYMLNLDCDHYINNSRALREAMCFMMDPTLGKKVCYVQFPQRFDGIDRNDRYANHNTVFFDINLKGLDGIQGPVYVGTGCVFNRQALYGYEPPHKGKIHFSSCCG-----------PRKKSRKSNKK

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
37			14	85	0.993533
46			14	85	0.993533
47	85	14			0.993533
50		14		85	0.993533
53		14	85		0.993533
54	14		85		0.993533
486	10		90		0.90298
558	10		90		0.90298
1102			12	87	0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain