SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17653

Length: 454 nt

Origin of reads: Biogeco_1 Biogeco_2

UniGene Fasta

>sp_v1.1_unigene17653
CGTCGTGACCTTGGCTGTCACTCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGCTTCTTACAGGTATAAATATAAGTTTCTCCATGCAACTACTGCAAATATTCCAAGTGGTGTTTTAAAAGATAGCAGAGGGAGCAAGTTAACAATTGGGACAGAAGAAGATGATGAAGAAACAAATGATTCCTAGACTTCTATCAACAGGATCACCATGAATCAGAAACACTTAGCAGGCTGCAGAAGAAATTTACTGTTTGGCTAAACGAATAGGTGTGTGCTTCCTTGCGAGCTACAAATTGGTTAGTATGTAAGCCTCAATGGAGATAATGTAGAGTCTAACAATGCAA

Ace file of the UniGene sp_v1.1_unigene17653

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	rad1 DNA damage checkpoint protein, putative; K02830 cell cycle checkpoint protein [EC:3.1.11.2]	-	-	2.0e-28	75%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	75%
Blast2go	rad1-like protein	-	-	1.88224e-28	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Exodeoxyribonuclease III.	EC:3.1.11.2	-	1.88224e-28	81%

Source	ECs	Term	Type	e value	Identity
AutoFact	Exodeoxyribonuclease III.	EC:3.1.11.2	-	2.0e-28	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	DNA repair	GO:0006281	Biological Process	1.88224e-28	81%
Blast2go	exodeoxyribonuclease III activity	GO:0008853	Molecular Function	1.88224e-28	81%
Blast2go	damaged DNA binding	GO:0003684	Molecular Function	1.88224e-28	81%
Blast2go	nucleus	GO:0005634	Cellular Component	1.88224e-28	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Repair protein Rad1/Rec1	IPR003021	-	1.88224e-28	81%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: tr_plants

Fln subject: F6HT64

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 42 aas, putative chimeric sequence, your sequence is shorter than subject: 99 - 300

Fln protein: RRDLGCHSGSSIQLSLNPDPPVVTFRGEGHGDLQIDFFYNAESDLFIAFQCDHYASYRYKYKFLHATTANIPSGVLKDSRGSKLTIGTEEDDEETNDS*

Protein Length: 100

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTTCCAGCATCCAGTTATCTTTAAATCCAGATCCTCCTGTTGTTACTTTTAGGGGTGAGGGTCATGGTGATTTGCAGATTGACTTCTTTTATAATGCTGAATCTGATCTCTTCATTGCATTCCAGTGTGATCACTATGCTTCTTACAGGTATAAATATAAGTTTCTCCATGCAACTACTGCAAATATTCCAAGTGGTGTTTTAAAAGATAGCAGAGGGAGCAAGTTAACAATTGGGACAGAAGAAGATGATGAAGAAACAAATGATTCCTAG___ACTTCTATCAACAGGATCACCATGAATCAGAAACACTTAGCAGGCTGCAGAAGAAATTTACTGTTTGGCTAAACGAATAGGTGTGTGCTTCCTTGCGAGCTACAAATTGGTTAGTATGTAAGCCTCAATGGAGATAATGTAGAGTCTAACAATGCAA

Fln Alignment:

sp_v1.1_unigene17653___GSSIQLSLNPDPPVVTFRGEGHGDLQIDFFYNAESDLFIAFQCDHYASYRYKYKFLHATTANIPSGVLKDSRGSKLTIG
F6HT64_______________GSSIQITLEPVPPSVTFRGEGHGDLQIDFMYYANTDLLIAFHCDHRVSYRYKYKFLRATTSNIPSSVIRDNRGSKLTIG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain