SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17647

Length: 505 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene17647
CGTCGTGACCTTGGCTGTCACTCAGCTTTTGACCTCAGAGTAGAGCCGAACCAAGTGGCGGCACCATTTCTCTCCATGCTAGATCTAACACGCCCTGCGACGGAAACCCAGATGCGAACATACCTTCTTGTGTACACGAAGCAGGCTGTTCACTTCCTCTCGCAGATCCTTGGCGGAGGAGCGGTCGATATTGAGTCTATACGTCATCCTTCGCTGTTTAGCGATGGAAGATGACAATAAGGTATTTTCTGTGGATGACGCATTTTTGGCTGTGGTCTTTGGGAAATTCCAATTGCTTTTGTTGGCTTATGCTGGGATAGGTTCAGTTGCTGAAGCAATGGAGATGATGTTACTTTCATTTATAGGACCAGCAATTCATTCTGAGTGGGGATTGTCTCCTCATCAAGAAAGCATGCTAACGAGTGTAGTATTTGTGGGAATGATGGTGGGTGCATATTTGTGGGGTGTAATTTCAGATGCAAAAGGAAGAAGGTATGGATTTTTT

Ace file of the UniGene sp_v1.1_unigene17647

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transporter-related	-	-	1.0e-28	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	2.94734e-29	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	2.94734e-29	81%
Blast2go	carbohydrate transport	GO:0008643	Biological Process	2.94734e-29	81%
Blast2go	sugar:hydrogen symporter activity	GO:0005351	Molecular Function	2.94734e-29	81%
Blast2go	integral to membrane	GO:0016021	Cellular Component	2.94734e-29	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Major facilitator superfamily domain, general substrate transporter	IPR016196	-	2.94734e-29	81%
Blast2go	Major facilitator superfamily domain	IPR020846	-	2.94734e-29	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADX7

Fln msg: Distance to subject end: 150 aas, your sequence is shorter than subject: 94 - 206

Fln protein: MEDDNKVFSVDDAFLAVVFGKFQLLLLAYAGIGSVAEAMEMMLLSFIGPAIHSEWGLSPHQESMLTSVVFVGMMVGAYLWGVISDAKGRRYGFF

Protein Length: 95

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTGACCTCAGAGTAGAGCCGAACCAAGTGGCGGCACCATTTCTCTCCATGCTAGATCTAACACGCCCTGCGACGGAAACCCAGATGCGAACATACCTTCTTGTGTACACGAAGCAGGCTGTTCACTTCCTCTCGCAGATCCTTGGCGGAGGAGCGGTCGATATTGAGTCTATACGTCATCCTTCGCTGTTTAGCG_-_ATGGAAGATGACAATAAGGTATTTTCTGTGGATGACGCATTTTTGGCTGTGGTCTTTGGGAAATTCCAATTGCTTTTGTTGGCTTATGCTGGGATAGGTTCAGTTGCTGAAGCAATGGAGATGATGTTACTTTCATTTATAGGACCAGCAATTCATTCTGAGTGGGGATTGTCTCCTCATCAAGAAAGCATGCTAACGAGTGTAGTATTTGTGGGAATGATGGTGGGTGCATATTTGTGGGGTGTAATTTCAGATGCAAAAGGAAGAAGGTATGGATTTTTT

Fln Alignment:

sp_v1.1_unigene17647___MEMMLLSFIGPAIHSEWGLSPHQESMLTSVVFVGMMVGAYLWGVISDAKGRRYGFF
D5ADX7_______________MEMMLLSFIGPAIHSEWGLSPHQESMLTSVVFVGMMVGALLWGIVSDSKGRRCGFF

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
22		66	33		1.0
23			33	66	1.0
24		66	33		1.0
25	66		33		1.0
277			50	50	1.0
393			25	75	0.996473
402		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain