SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17646

Length: 2007 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17646
ATGGGGGGTGGCAAAGATCTAAGCACGCTGCAATTTCTCTGAGTCTTCGTGTTATATATATTGCTGTAAGACCTGGGATCAAACCCAGGCACTCGCATCGGCTTGAAGATCGTCGAAAAAGCCTTTTCATAGTGTGAGGAATCGCCCACTGTGGAGGAGAATTGTCCGTAGTTCACGTCAGCGGCTGGCTGAGCGTTCCACGCTACTTGGCTGGTTCCTGGTATTGAAGAGCACAATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGTCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCAGAAAACGGACAGACTGTTCAAAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCTGGAGGGATTGGGCAGCCTGTCTCACTGTTGATTAAAATGTCTCCTCTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGTGTTGCAGCAGATCTTAGCCACTGCAACACTCCAGCACAGGTTCTAGATTTTACTGGGCCAGCTGAACTGGCAAATTGTTTGAAGGGTGTAGATGTGGTGGTCATCCCTGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACAGTCCTAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCTATTGCTGCTGAGGTGCTGAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACTACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAAGCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCATTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCTTCGCAGTGAGTGACAGGCCACT

Ace file of the UniGene sp_v1.1_unigene17646

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Malate dehydrogenase n=2 Tax=Pinaceae RepID=C9EIK5_9CONI	-	-	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	nad-malate dehydrogenase	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Malate dehydrogenase.	EC:1.1.1.37	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	87%
Blast2go	Pyruvate metabolism	00620	87%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	87%
Blast2go	Methane metabolism	00680	87%
Blast2go	Carbon fixation in photosynthetic organisms	00710	87%
Blast2go	Carbon fixation pathways in prokaryotes	00720	87%
Blast2go	Biosynthesis of phenylpropanoids	01061	87%
Blast2go	Biosynthesis of terpenoids and steroids	01062	87%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	87%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	87%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	87%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	87%
Blast2go	Biosynthesis of plant hormones	01070	87%
Blast2go	Metabolic pathways	01100	87%
Blast2go	Biosynthesis of secondary metabolites	01110	87%

Source	GOs	Term	Type	Identity
Blast2go	malate metabolic process	GO:0006108	Biological Process	87%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	87%
Blast2go	tricarboxylic acid cycle	GO:0006099	Biological Process	87%
Blast2go	glycolysis	GO:0006096	Biological Process	87%
Blast2go	binding	GO:0005488	Molecular Function	87%
Blast2go	L-malate dehydrogenase activity	GO:0030060	Molecular Function	87%
Blast2go	chloroplast	GO:0009507	Cellular Component	87%

Source	InterPros	Term	Type	Identity
Blast2go	Lactate/malate dehydrogenase, N-terminal	IPR001236	-	87%
Blast2go	Malate dehydrogenase, active site	IPR001252	-	87%
Blast2go	Malate dehydrogenase, type 1	IPR010097	-	87%
Blast2go	Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal	IPR015955	-	87%
Blast2go	NAD(P)-binding domain	IPR016040	-	87%
Blast2go	Lactate/malate dehydrogenase, C-terminal	IPR022383	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM0

Fln msg:

Fln protein: MASATLFMNSVSVSGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK*

Protein Length: 414

Fln nts: ATGGGGGGTGGCAAAGATCTAAGCACGCTGCAATTTCTCTGAGTCTTCGTGTTATATATATTGCTGTAAGACCTGGGATCAAACCCAGGCACTCGCATCGGCTTGAAGATCGTCGAAAAAGCCTTTTCATAGTGTGAGGAATCGCCCACTGTGGAGGAGAATTGTCCGTAGTTCACGTCAGCGGCTGGCTGAGCGTTCCACGCTACTTGGCTGGTTCCTGGTATTGAAGAGCACA_-_ATGGCATCTGCAACACTGTTCATGAATTCAGTTTCTGTCTCTGGGGTTCTAGCACCCATTTGTGAAACTCGTCCATCTGTTGCTGGACTCCAGGGCCAGGCTTCTGCAGTTAGCTTTCCTATGAAGAAGGTTTTCAAGACTTTCAGTGGCCTGAAAGCTGGTGTAGCCTGTGAATCTGAGTCATCCTTCTTTAGTCATGAGACAAATGCGGTTCTTTGGTCGTCTGCTAGGAGGCCAAGGTCAGCAGAAAACGGACAGACTGTTCAAAAGGCTGGTCAGATTCGGGCATCAACATTTAAGGTTGCTATTCTTGGAGCTGCTGGAGGGATTGGGCAGCCTGTCTCACTGTTGATTAAAATGTCTCCTCTGATTTCTGGTTTGCATCTTTATGATATTGCAAATGTGAAAGGTGTTGCAGCAGATCTTAGCCACTGCAACACTCCAGCACAGGTTCTAGATTTTACTGGGCCAGCTGAACTGGCAAATTGTTTGAAGGGTGTAGATGTGGTGGTCATCCCTGCAGGAGTTCCAAGAAAGCCAGGCATGACTCGAGATGACCTTTTCAACATCAATGCTGGTATAGTGAGGACCTTGGTAGAAGCTGTTGCAGATAACAGTCCTAATGCCTTCATTCAAATCATCAGTAACCCTGTAAATTCAACTGTACCTATTGCTGCTGAGGTGCTGAAGCAGAAAGGCGTATATGATCCTAAAAAGCTGTTTGGTGTAACTACCCTGGACGTTGTTAGAGCAAACACTTTTGTTGCTCAGAAAAAGAATCTAAGACTTATTGATGTTGACGTGCCAGTTGTTGGAGGTCATGCTGGGATCACCATTCTTCCATTACTGTCCAAAACCAAGCCTTCTGTAACATTCACGCAGGAGGAGATTGAACAGCTTACAGTCAGAATTCAGAATGCTGGAACTGAAGTTGTGGAAGCAAAAGCGGGCGCTGGATCTGCAACTCTCTCCATGGCTTATGCTGCTGCTAGATTTGTTGAATCTTCTCTCCGTGCACTTGATGGTGATCCTGATGTGTATGAGTGTTCTTATATTCAATCTGAACTGACAGAATTACCTTTCTTTGCTTCTAGGATTAAACTTGGGAAGCAAGGTGTTGAAGCGGTGATTGCCTCAGACCTTGAGGGGCTGACTGAGTATGAACAGAAATCTCTAGAAGCTCTTAAGCCAGAGTTGAAGGCAAGCATTGAAAAGGGCATTGCTTTTGCAAACAAGTAA___GCACCAGTTGGTAGTGCCGTTTGAAGGCATTCCATTTAACTTGAATTGTAGGACAAATAAGATGAGCAACATGCACTACGGCTTTAGGGCGCTGTCGTTTTTGCAGTTTAGGCATATATTTTTGCATTTTGGTACTAAAGACAATTCCAAGCTCTTTTGAGGAAAGACGGAGTACTGACGGTTATCTACTTTTCCATGCCCTTAGCTTTTCCAGAGGAATTCTCAATAAGGTCTTTATTGATCTAATGTTTATTTCACCAGAAACTGCTAATACAAGTTCCCAATACCACATGTTTTTAGGTTGTTGCAAATAGGCATAGATTTTGCATATTGATACAAAGACAATTTCCAGTCCTTTTGAGGAAAGACAGAAGGTTGACTTTCTTATGCGGGCTTGGTGATTCACTATTATTTACTTTCTCATGTCCTGAGCTTTTACGGAGAAATTCTCAGTAAGGTCTTTATTGATTTAATGTTTATTTTGCTAGAAACTGCGAATACAAGTCCCCCTTCGCAGTGAGTGACAGGCCACT

Fln Alignment:

sp_v1.1_unigene17646___MASATLFMNSVSVSGVLAPICETRPSVAGLQGQASAVSFPMKKVFKTFSGLKAGVACESESSFFSHETNAVLWSSARRPRSAENGQTVQKAGQIRASTFKVAILGAAGGIGQPVSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQVLDFTGPAELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKQKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQEEIEQLTVRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKQGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK
A9NUM0_______________MASATSFMSSVSVSGFLAPICETRPSGAGLQ--ASAVSFPTKKVFNTFSGLKAGVACESEASFFSHETNAVLWSSVSRPRSAENRQIVPSAGQIRASTFKVAILGAAGGIGQPLSLLIKMSPLISGLHLYDIANVKGVAADLSHCNTPAQILDFTGPAELANSLKDVDVVVIPAGVPRKPGMTRDDLFNINAGIVRTLVEAVADNSPNAFIQIISNPVNSTVPIAAEVLKKKGVYDPKKLFGVTTLDVVRANTFVAQKKNLRLIDVDVPVVGGHAGITILPLLSKTKPSVTFTQDEIEQLTIRIQNAGTEVVEAKAGAGSATLSMAYAAARFVESSLRALDGDPDVYECSYIQSELTELPFFASRIKLGKKGVEAVIASDLEGLTEYEQKSLEALKPELKASIEKGIAFANK

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
174		36		63	1.0
216			14	85	0.993533
218		85		14	0.993533
219		14		85	0.993533
220		14	85		0.993533
222	14			85	0.993533
223	85	14			0.993533
226		14	85		0.993533
227	85	14			0.993533
228	85			14	0.993533
246		85		14	0.993533
252	16			83	0.994512
273		33		66	1.0
347	83		16		0.994512
481	80	20			0.995493
1532		15		84	0.999986
1533	84		15		0.999986
1534	84			15	0.999986
1535		15	84		0.999986
1536	84		15		0.999986
1540		15	84		0.999986
1542	83			16	0.999991
1543	83		16		0.999991
1544		86	13		0.999973
1545	66	13	20		1.0
1548		80	20		1.0
1551		20		80	1.0
1552	73	6		20	1.0
1553	6	73		20	1.0
1558			21	78	1.0
1561		21	78		1.0
1562	21		78		1.0
1563		21	78		1.0
1565		23	76		1.0
1566	23	76			1.0
1614			86	13	0.999973
1630		8		91	0.999807
1631			8	91	0.999807
1636		8	91		0.999807
1637	91	8			0.999807
1638	91			8	0.999807
1639	91			8	0.999807
1641	91		8		0.999807
1643			91	8	0.999807
1646			91	8	0.999807
1647		8		91	0.999807
1651	8		91		0.999807

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain