SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17640

Length: 435 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene17640
ATGGGGCTGCTGGATTAGCGCTCAATGTAGAGGGCACTTACACAACAAAGACTTACCTACAAATCATTTTGGAAAACATGCCTGCATTTGGAAGAAGCTTTCCTGGAATGCATAGCCAACAAGCTGTACGATTACAGGAGCTAGTAGATTTTGTACAATCCCAGGGAGGAAGTTCTGGATCAGAGCCTCCAGCTAGTCCAGTGCTATCCACGGAGTCCATAGTTGAGGAACTGCAGTCACGGATGAAGAGACTTGAGCGATGGCACTTTCTTAACACAATATTATGGACATTTCTTACTTCTGCTTTAGTTGGATACGCAATGTATCAACGGAAACGAAGATTGCACTGATCTTCAATATATTTTAATTTCTTTGATATGGAAAGGTTTTTATGATGGGTGATGATGTATCAACCCAAAAGCTTAACAACCATTA

Ace file of the UniGene sp_v1.1_unigene17640

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP binding / kinase n=1 Tax=Arabidopsis thaliana RepID=UPI0001A7AEBE	-	-	2.0e-28	54%
FL-Next	tr=Putative uncharacterized protein; Arabidopsis lyrata subsp. lyrata (Lyre-leaved rock-cress).	-	-	0.0	58%
Blast2go	p-loop containing nucleoside triphosphate hydrolase-like protein	-	-	4.16899e-28	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Phosphotransferases with an alcohol group as acceptor.	EC:2.7.1.-	-	4.16899e-28	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Pentose phosphate pathway	00030		4.16899e-28	77%
Blast2go	Lipopolysaccharide biosynthesis	00540		4.16899e-28	77%
Blast2go	Nicotinate and nicotinamide metabolism	00760		4.16899e-28	77%
Blast2go	Metabolic pathways	01100		4.16899e-28	77%
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	4.16899e-28	77%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	4.16899e-28	77%
Blast2go	Thiamine metabolism	00730	4.16899e-28	77%
Blast2go	Metabolic pathways	01100	4.16899e-28	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	4.16899e-28	77%
Blast2go	phosphotransferase activity, alcohol group as acceptor	GO:0016773	Molecular Function	4.16899e-28	77%
Blast2go	kinase activity	GO:0016301	Molecular Function	4.16899e-28	77%
Blast2go	ATP binding	GO:0005524	Molecular Function	4.16899e-28	77%
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	4.16899e-28	77%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	4.16899e-28	77%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7LLR4

Fln msg: your sequence is shorter than subject: 116 - 945

Fln protein: GAAGLALNVEGTYTTKTYLQIILENMPAFGRSFPGMHSQQAVRLQELVDFVQSQGGSSGSEPPASPVLSTESIVEELQSRMKRLERWHFLNTILWTFLTSALVGYAMYQRKRRLH*

Protein Length: 117

Fln nts: ATGGGGCTGCTGGATTAGCGCTCAATGTAGAGGGCACTTACACAACAAAGACTTACCTACAAATCATTTTGGAAAACATGCCTGCATTTGGAAGAAGCTTTCCTGGAATGCATAGCCAACAAGCTGTACGATTACAGGAGCTAGTAGATTTTGTACAATCCCAGGGAGGAAGTTCTGGATCAGAGCCTCCAGCTAGTCCAGTGCTATCCACGGAGTCCATAGTTGAGGAACTGCAGTCACGGATGAAGAGACTTGAGCGATGGCACTTTCTTAACACAATATTATGGACATTTCTTACTTCTGCTTTAGTTGGATACGCAATGTATCAACGGAAACGAAGATTGCACTGA___TCTTCAATATATTTTAATTTCTTTGATATGGAAAGGTTTTTATGATGGGTGATGATGTATCAACCCAAAAGCTTAACAACCATTA

Fln Alignment:

sp_v1.1_unigene17640___AAGLALNVEGTYTTKTYLQIILENMPAFGRSFPGMHSQQAVRLQELVDFVXXXXXXXXXEP--PASPVLSTESIVEELQSRMKRLERWHFLNTILWTFLTSALVGYAMYQRKRR
D7LLR4_______________AAGSALKLDGSYTTKSYLQIVLERLPPVQRSSSGIHTQQAARLQELVEFIQSQGSSNSVSESSPRRDGSSIDNVLEDMQSRIKRLERWHTINTVLWTFLMSALVGYSLYQRKRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain