SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17635

Length: 557 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene17635
CGTGGTGAGTTGTCTGTTAATTTAAGGAAGGCAATGCTCGCAGGCTATTTCATGCAGGTGGCTCATCGAGAGCGGAGTGGACAGTATCTCACAGTAAAAGACAATCAGATTGTTCAGTTGCATCCTTCAACCTGTGTTGATCACAAGCCAGAATGGGTCCTATACAATGAGTATGTGTTGACAAGTAGTAATTTCATTCGTATGGTCACTGATGTTCGAGGAGAGTGGCTGATAGATATCGCCCCTCATTATTATGACCTTAGCAACTTTCCTCAGTGCGAGGCAAGGTATGTCTTGGAGAGGCTTTATAACAAGCGTGAAAGGGACAAATCGGTTCGCAAAAACAAGAGTAAAAAAACTGTTCTTAAATCAGCTGTATGTTAGCCTAATCTATCCTCTCAATTCCTCTGACAGAGATAAATGCATATATGGTTCTTGGAGGTTATTTGTTGACCGTTGGTCCAGACTCCAGATTAAACCATATGGAATGAGCTTGTTCATAGGAGAAACTGTGTACCATTTTAAACTAAGTTGCTGTTATTATCAGCATCATCTTC

Ace file of the UniGene sp_v1.1_unigene17635

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pre-mRNA-splicing factor ATP-dependent RNA helicase; K12820 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:3.6.4.13]	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	29%
Blast2go	protein	-	-	88%

Source	ECs	Term	Type	e value	Identity
AutoFact	RNA helicase.	EC:3.6.4.13	-	0.0	76%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	88%
Blast2go	RNA helicase activity	GO:0003724	Molecular Function	88%
Blast2go	ATP-dependent helicase activity	GO:0008026	Molecular Function	88%
Blast2go	nucleic acid binding	GO:0003676	Molecular Function	88%
Blast2go	ATP binding	GO:0005524	Molecular Function	88%
Blast2go	nucleolus	GO:0005730	Cellular Component	88%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	88%
Blast2go	membrane	GO:0016020	Cellular Component	88%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Domain of unknown function DUF1605	IPR011709	-	0.0	88%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 33 aas, putative chimeric sequence, your sequence is shorter than subject: 128 - 348

Fln protein: RGELSVNLRKAMLAGYFMQVAHRERSGQYLTVKDNQIVQLHPSTCVDHKPEWVLYNEYVLTSSNFIRMVTDVRGEWLIDIAPHYYDLSNFPQCEARYVLERLYNKRERDKSVRKNKSKKTVLKSAVC*

Protein Length: 129

Fln nts: CGTGGTGAGTTGTCTGTTAATTTAAGGAAGGCAATGCTCGCAGGCTATTTCATGCAGGTGGCTCATCGAGAGCGGAGTGGACAGTATCTCACAGTAAAAGACAATCAGATTGTTCAGTTGCATCCTTCAACCTGTGTTGATCACAAGCCAGAATGGGTCCTATACAATGAGTATGTGTTGACAAGTAGTAATTTCATTCGTATGGTCACTGATGTTCGAGGAGAGTGGCTGATAGATATCGCCCCTCATTATTATGACCTTAGCAACTTTCCTCAGTGCGAGGCAAGGTATGTCTTGGAGAGGCTTTATAACAAGCGTGAAAGGGACAAATCGGTTCGCAAAAACAAGAGTAAAAAAACTGTTCTTAAATCAGCTGTATGTTAG___CCTAATCTATCCTCTCAATTCCTCTGACAGAGATAAATGCATATATGGTTCTTGGAGGTTATTTGTTGACCGTTGGTCCAGACTCCAGATTAAACCATATGGAATGAGCTTGTTCATAGGAGAAACTGTGTACCATTTTAAACTAAGTTGCTGTTATTATCAGCATCATCTTC

Fln Alignment:

sp_v1.1_unigene17635___LRKAMLAGYFMQVAHRERSGQYLTVKDNQIVQLHPSTCV---DHKPEWVLYNEYVLTSSNFIRMVTDVRGEWLIDIAPHYYDLSN
D5ADJ5_______________IRKAICSAYFHNAARLKGIGEYANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFSIKD

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
61		20	80		0.995493
64		20	80		0.995493
65	20	80			0.995493
282		57		42	1.0
352	20		80		0.995493
439		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain