SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17627

Length: 1695 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17627

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to FK (FACKEL); delta14-sterol reductase; K00222 delta14-sterol reductase [EC:1.3.1.70]	-	-	59%
FL-Next	sp=Delta(14)-sterol reductase; Arabidopsis thaliana (Mouse-ear cress).	-	-	63%
Blast2go	sterol c-14 reductase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:1.3.1.7-	-	0.0	77%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:1.3.1.7-	-	0.0	59%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	77%
Blast2go	sterol biosynthetic process	GO:0016126	Biological Process	77%
Blast2go	delta14-sterol reductase activity	GO:0050613	Molecular Function	77%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	77%
Blast2go	membrane	GO:0016020	Cellular Component	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9LDR4

Fln msg:

Fln protein: MNAGPLIAALRDCPLLAFPSWTTAGIILAYFCYMALAQFLLPGKQIPGVVLADKTRIYYRCNGFITLFLLVTLLGISMAAGILSLAVVADKGGELLSTTLILSALISLFLYVAGHLSQSKMTSLKPHITGNFIHDWWFGIQLNPQFLGIDLKFLLIRSGMIGWVVINLSVAAKAFQLKDSLNLSMILYQIFCLLYVMDYFWYEEYMTSTWDIIAENLGFMLVFGDLVWIPFTFSIQGWWLLTHKPDLTKAAAILDVLIFIIGYRVFRGSNKQKHIFKKDPTARIWGEPPKVIGGKLLASGAYPDTSNYLGDLLLAFSFSLPCGASSFVPYFYPMYLLFLLLWRERRDEAKCREKYKEDWVTYCKLVPWRIIPYLY*

Protein Length: 377

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATGTTTAAGTTGCCAACACGTGCACAGCAGTAGGAGCCACTTACTCCATTAAAACCTCCGGAGCAGGTGCCTCTGTTCAGTGAAGTTCTGTTGCATTTTGTTCGCAGTGAAGAAAA_-_ATGAACGCGGGGCCTCTCATAGCAGCTCTAAGGGACTGCCCATTGCTGGCATTTCCCTCATGGACCACGGCCGGAATTATTTTGGCATATTTTTGTTATATGGCTTTAGCTCAATTTCTCCTGCCCGGAAAGCAGATTCCTGGGGTCGTGCTTGCTGATAAGACGAGGATTTACTATCGCTGTAATGGTTTTATCACTCTTTTTCTGCTGGTTACTCTTTTAGGAATCAGTATGGCAGCAGGGATCTTGTCACTAGCAGTGGTGGCAGACAAAGGTGGGGAGCTACTTTCTACAACACTGATATTAAGTGCTTTGATTTCATTATTCTTATATGTTGCTGGTCACTTATCCCAAAGCAAAATGACTTCTTTAAAACCACATATTACGGGGAACTTTATTCATGACTGGTGGTTTGGGATACAATTAAATCCACAATTCTTGGGCATTGACCTCAAATTCCTTCTCATTCGTTCTGGGATGATTGGTTGGGTTGTCATAAATCTATCAGTTGCAGCAAAGGCCTTCCAACTGAAGGATTCATTAAACCTTTCAATGATCCTTTATCAGATATTTTGTTTGTTATATGTGATGGATTACTTCTGGTATGAAGAGTATATGACATCCACTTGGGACATAATTGCGGAGAATCTTGGTTTCATGTTGGTCTTTGGGGACTTGGTTTGGATTCCATTCACTTTCAGTATTCAGGGTTGGTGGCTTTTAACACACAAACCTGACCTTACAAAAGCTGCTGCCATCCTTGATGTTCTAATCTTTATAATTGGATATCGGGTTTTCAGAGGCTCAAATAAACAGAAGCATATTTTCAAAAAAGATCCAACAGCTCGTATATGGGGTGAGCCTCCGAAGGTTATCGGGGGAAAATTGCTAGCTTCAGGGGCATATCCAGACACTAGTAATTATCTTGGTGACTTACTTCTAGCCTTCTCTTTTAGTTTGCCTTGTGGAGCTAGCTCTTTCGTTCCTTACTTTTATCCTATGTATCTGCTGTTCCTACTACTTTGGAGAGAGCGAAGAGATGAGGCAAAATGTCGCGAAAAATACAAGGAGGATTGGGTTACATACTGCAAACTTGTACCGTGGAGAATAATACCATACTTGTATTAG___TTGTCTCCGACTTTGAATTTTTCGTTATTCAATGCATGTTTTCTCCTTACAGGAATTGCGAGCCTCTCGAGTCTTTGGAGAAATTTTCATCTTTATGGGCGTTGTTCTCTAGACTGTGGGGTTCCGACCTGGATAACTCACAGTGGAGATTGAAATGTATGTAAATGTTGTCTTTTAGCTATATTGGGTTCTCGATGTCCCATGACTTAAATGAGTTTGGACTTTGGCAATATGGAAAAGTTAATATCATATTGGAAAATAATTTAGCTTGATTGCTGATGTCCACGTTTAATGTATGAAATCAAGACAATTACTCGACAAGAATGGAGAAAACTTCTGACATGATGAGAATGAAATCTATGATTTGATTTGTGAACTTCTAATAGTTTCCAAAGGCTATTTCGGTTTATGTTGAGGATGTTCT

Fln Alignment:

sp_v1.1_unigene17627___PSWTTAGIILAYFCYMALAQFLLPGKQIPGVVLADKTRIYYRCNGFITLFLLVTLLGISMAAGILSLAVVADKGGEXXXXXXXXXXXXXXXXYVAGHLSQSKMTSLKPHITGNFIHDWWFGIQLNPQFLGIDLKFLLIRSGMIGWVVINLSVAAKAFQLKDSLNLSMILYQIFCLLYVMDYFWYEEYMTSTWDIIAENLGFMLVFGDLVWIPFTFSIQGWWLLTHKPDLTKAAAILDVLIFIIGYRVFRGSNKQKHIFKKDPTARIWGEPPKVIGGKLLASGAY--PDTSNYLGDLLLAFSFSLPCGASSFVXXXXXXXXXXXXXWRERRDEAKCREKYKEDWVTYCKLVPWRIIPYLY
Q9LDR4_______________PSLQSVYVLVFYFVYLAVAGEILPGKVIRGVLLSDGSQLRYRCNGLLALILLVAILGICAKLGIVSPLVVADRGLELLSATFIFCVLVTLALYVTGRSSSNKGSSLKPHVSGNLVHDWWFGIQLNPQFMSIDLKFFFVRAGMMGWLLINLSILAKSVQ-DGSLSQSMILYQIFCALYILDYFVHEEYMTSTWDIIAERLGFMLVFGDLLWIPFTFSIQGWWLLHNKVELTVPAIVVNCLVFLIGYMVFRGANKQKHIFKKNPKTPIWGKPPVVVGGKLLVSGYWGIARHCNYLGDLMLALSFSLPCGISSPVPYFYPIYLLILLIWRERRDEVRCAEKYKEIWAEYLRLVPWRILPYVY

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
106	25		25	50	1.0
107			25	75	0.996473
108		50	50		1.0
109	75		25		0.996473
111			25	75	0.996473
182		85		14	0.993533
183			14	85	0.993533
185		85	14		0.993533
186		85	14		0.993533
187		85	14		0.993533
189	14			85	0.993533
194			85	14	0.993533
203		85	14		0.993533
205		85		14	0.993533
209			85	14	0.993533
210	85			14	0.993533
211		85	14		0.993533
233	80		20		0.995493
246	85		14		0.993533
247			14	85	0.993533
267		85		14	0.993533
1028	66		33		1.0
1253	12		87		1.0
1286	7		3	88	0.999079
1301		8		91	0.999807
1306			4	86	0.999539
1420	18		81		0.999994
1479	14		85		0.993533
1523			11	88	0.999952
1582	50		50		1.0
1664	33			66	0.997452
1666	66	33			0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain