SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17626

Length: 1468 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17626

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Xyloglucan endotransglycosylase n=1 Tax=Annona cherimola RepID=B8XXI5_ANNCH	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	xyloglucan endotransglucosylase hydrolase protein a	-	-	73%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	73%

Source	KEGGs	Term	Type	Identity
Blast2go	Ascorbate and aldarate metabolism	00053		73%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130		73%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520		73%
Blast2go	Glycosaminoglycan degradation	00531		73%
Blast2go	Metabolic pathways	01100		73%
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	73%

Source	GOs	Term	Type	Identity
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	73%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	73%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	73%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	73%
Blast2go	cell wall	GO:0005618	Cellular Component	73%
Blast2go	apoplast	GO:0048046	Cellular Component	73%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 16	IPR000757	-	73%
Blast2go	Glycoside hydrolase, family 16, active site	IPR008263	-	73%
Blast2go	Beta-glucanase	IPR008264	-	73%
Blast2go	Concanavalin A-like lectin/glucanase	IPR008985	-	73%
Blast2go	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	73%
Blast2go	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P223

Fln msg: your sequence is longer than subject: 352 - 307

Fln protein: MGWGSVRERGSPTLFICMQLQLHSVHRLQQPPSVLSLCWFLFTSMGRTWRAMGMSFLVLVLIGLIACVSCQSDGDDSSPKVFDDNFQILWAQDHFRTSENGQVWHLVLDQQSGSGFKSKNKYRFGWFSMKLKLVPGDSAGVVTAYYMSSDTDMNRDELDFEFLGNRSGQPYGLQTNIYSNGVGGREQRHILWFDPTTEFHTYSILWNAHQIVFFVDQVPLRVHRHTKATRDVFPRKQGMYMFSSIWNGDNWATRGGLEKTNWAAAPFVSSYKKFHGLGCKWEDQNTTQSSCAHSNNASARHWWDKPVARTLTKKQREYYRWVNSKYLTYDYCHDQPRYPIKPVECSVAPWD*

Protein Length: 353

Fln nts: ATTGGGGATCTACGT_-_ATGGGCTGGGGTTCCGTGAGGGAGCGAGGCAGCCCGACCCTATTTATATGCATGCAGCTTCAGCTCCACTCAGTCCACAGGCTCCAGCAACCGCCCTCTGTTCTGAGCTTGTGCTGGTTTCTTTTTACAAGTATGGGCAGGACTTGGAGAGCAATGGGGATGAGTTTCTTGGTGTTGGTATTGATTGGTCTGATTGCCTGTGTTTCTTGCCAGTCCGACGGTGATGATTCATCTCCCAAGGTTTTTGATGATAATTTTCAGATATTGTGGGCTCAGGATCACTTCAGGACCTCTGAAAATGGTCAAGTATGGCACCTGGTTCTTGACCAGCAATCAGGTTCTGGGTTCAAATCGAAGAACAAGTATAGATTCGGATGGTTCAGCATGAAGCTCAAGCTCGTACCAGGAGACTCTGCAGGGGTTGTCACTGCTTATTATATGTCTTCTGATACAGACATGAATAGGGACGAGCTGGATTTTGAATTTCTAGGGAACAGAAGTGGACAGCCTTATGGTCTTCAGACGAACATCTATTCAAATGGTGTGGGTGGAAGGGAGCAGAGGCATATCCTCTGGTTCGATCCAACGACAGAGTTTCACACTTACTCTATCCTCTGGAACGCTCATCAGATTGTGTTTTTCGTGGATCAAGTTCCATTGAGAGTCCACAGGCACACAAAGGCTACACGCGATGTGTTCCCTCGAAAGCAGGGGATGTACATGTTCTCCAGCATTTGGAATGGAGATAACTGGGCAACGAGAGGCGGCCTTGAGAAGACCAACTGGGCGGCCGCTCCATTCGTATCTTCGTACAAGAAATTCCATGGCCTCGGCTGCAAATGGGAGGATCAAAACACGACCCAATCGTCCTGTGCTCACAGTAATAATGCAAGTGCAAGGCACTGGTGGGATAAGCCCGTGGCGCGGACTCTGACGAAGAAACAGAGGGAATATTACAGGTGGGTGAACAGCAAATATTTGACTTACGATTACTGCCATGATCAGCCTCGCTACCCCATTAAACCAGTCGAATGCTCGGTGGCTCCCTGGGACTGA___ACATGAAGCTTCGTTCATGGCCAAGCTTGTTCTGAAAATTCTTCCTTGTTATTGTGTCATAGTCATACTCAGCTAGTACTGTCGGCCATAACATCTAGGATGCATTGTGATTACCATAGTTAGTGCGAATAATTGCTGAATATAAATTATTGGAGTGTTCTGCACATTTGGTATAATAGAATCTGTGTCTTTGAATTTATGTTGCAATCAATCACGAGGATAACAGTCCAATGAGTTAACTGGATTGGTGTGTATGAACTCGAAGAACCGTCTCGAACAGTCAACTAAATTATTAAGATAGACCTGCAATGAATTCGTTTTGTCTGATCCAAACTCCTAATCGTGATTTGACAGTGAAATTTCAATCAATACAATAATGCTAAACCTGCTTGTTTTG

Fln Alignment:

sp_v1.1_unigene17626___MGRTWRAMGMSFLVLVLIGLIACVSCQSDGDDSSPKVFDDNFQILWAQDHFRTSENGQVWHLVLDQQSGSGFKSKNKYRFGWFSMKLKLVPGDSAGVVTAYYMSSDTDMNRDELDFEFLGNRSGQPYGLQTNIYSNGVGGREQRHILWFDPTTEFHTYSILWNAHQIVFFVDQVPLRVHRHTKATRDVFPRKQGMYMFSSIWNGDNWATRGGLEKTNWAAAPFVSSYKKFHGLGCKWEDQNTTQSSCAHSNNASARHWWDKPVARTLTKKQREYYRWVNSKYLTYDYCHDQPRYPIKPVECSVAPWD
A9P223_______________MGGTWRAMGMSFLVLALIGLIACVSCQSDGDDSSAKVFDDNFQIMWAEDHFRTSENGQVWHLALDQKSGSGFKSKNKYRFGWFSMKLKLVPGDSAGVVTAYYMSSDTDKNRDELDFEFLGNRSGQPYALQTNIYAKGVGEREQRHTLWFDPTTEFHTYSILWNAHQIVFFVDQVPVRVHRHTKATRDVFPRKQGMYMFSSIWNADNWATRGGLEKTNWSAAPFVSSYKKFHGLGCKWEDDQTTLLPCANSNNASARHWWDKPVAWTLTKKQREYYRWVNSKYLTYDYCHDQSRYSTKPVECSVAPWD

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
75		33		66	0.997452
80	33			66	0.997452
82	33	66			0.997452
85	25	75			0.996473
88		75	25		0.996473
89	75		25		0.996473
90		50	50		1.0
91	25			75	0.996473
92	25	75			0.996473
95		75	25		0.996473
101		75	25		0.996473
103	75		25		0.996473
105		75		25	0.996473
106	75			25	0.996473
107	75		25		0.996473
109		75		25	0.996473
111		75	25		0.996473
112	25	75			0.996473
113		75	25		0.996473
114		25		75	0.996473
150	75		25		0.996473
654	1			92	1.0
1056	10		89		0.999919
1091		14		85	0.999981
1108	88		11		0.923564
1116			77	22	0.999999
1155			11	88	0.923564
1166	22		77		0.999999
1209		80	20		0.999996
1240			12	87	0.992554
1283	75		24		1.0
1343	29		70		1.0
1388		16		83	0.999991
1437	66		33		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain