SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17624

Length: 510 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene17624
CGTCGTGACCTTGGCTGTCACTCATCTCGCCGCATCCGTTTTTGGAAAGGATGCCGTCGTGACCTTGGCTGTCACTCAAGATGAGAGTTTCATGGGCCTCAGTGATGCACAACACTGCGGAAAAATGCGTGCCTTGGATAAATTAATGGCATCTTGGATTTCACAAGGCGACAAAATCTTGCTCTTTAGCTATTCTGTCAGGATGTTAGACATACTGGAGAAATTTCTTATTCGTAAGGGCTATTGCTTTTCTCGGCTTGATGGGTCAACTCCAATGAATAGTCGCCAGTTCCTTGTTGACAATTTTAATAGAAGTCCAAGCAAGCAGGTCTTCCTTATTTCTACTCGTGCTGGTGGGCTAGGACTAAATCTCATTAGTGCAAATCGAGTGGTTATATTTGATCCAAACTGGAACCCTGCAACGGACTTGCAAGCACAGGACCGGTCATTCCGTTATGGGCAGAAACGACATGTTACAGTATTTCGCTTTCTTGCTGCAGGGTCCCTGGA

Ace file of the UniGene sp_v1.1_unigene17624

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	SWI2; SWI2 (SWITCH 2); ATP binding / DNA binding / helicase/ nucleic acid binding	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	42%
Blast2go	snf2 super family	-	-	80%

Source	GOs	Term	Type	Identity
Blast2go	helicase activity	GO:0004386	Molecular Function	80%
Blast2go	DNA binding	GO:0003677	Molecular Function	80%
Blast2go	ATP binding	GO:0005524	Molecular Function	80%
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	80%
Blast2go	plastid	GO:0009536	Cellular Component	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Helicase, C-terminal	IPR001650	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AD70

Fln msg: Distance to subject end: 121 aas, your sequence is shorter than subject: 169 - 377

Fln protein: VVTLAVTHLAASVFGKDAVVTLAVTQDESFMGLSDAQHCGKMRALDKLMASWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPMNSRQFLVDNFNRSPSKQVFLISTRAGGLGLNLISANRVVIFDPNWNPATDLQAQDRSFRYGQKRHVTVFRFLAAGSL

Protein Length: 170

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCTCGCCGCATCCGTTTTTGGAAAGGATGCCGTCGTGACCTTGGCTGTCACTCAAGATGAGAGTTTCATGGGCCTCAGTGATGCACAACACTGCGGAAAAATGCGTGCCTTGGATAAATTAATGGCATCTTGGATTTCACAAGGCGACAAAATCTTGCTCTTTAGCTATTCTGTCAGGATGTTAGACATACTGGAGAAATTTCTTATTCGTAAGGGCTATTGCTTTTCTCGGCTTGATGGGTCAACTCCAATGAATAGTCGCCAGTTCCTTGTTGACAATTTTAATAGAAGTCCAAGCAAGCAGGTCTTCCTTATTTCTACTCGTGCTGGTGGGCTAGGACTAAATCTCATTAGTGCAAATCGAGTGGTTATATTTGATCCAAACTGGAACCCTGCAACGGACTTGCAAGCACAGGACCGGTCATTCCGTTATGGGCAGAAACGACATGTTACAGTATTTCGCTTTCTTGCTGCAGGGTCCCTGGA

Fln Alignment:

sp_v1.1_unigene17624___QHCGKMRALDKLMASWISQGDKILLFSYSVRMLDILEKFLIRKGYCFSRLDGSTPMNSRQFLVDNFNRSPSK-QVFLISTRAGGLGLNLISANRVVIFDPNWNPATDLQAQDRSFRYGQKRHVTVFRFLAAGS
D5AD70_______________EQCGKFQLLDRLLKHLRARNHKVLIFSQWTRVLDLLDYCLSESGHDMCRIDGSVKLHDRQRQIKDFNDPNSNLHIFLLSTRAGGLGINLTAADTCIIYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLCTSHS

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
55		66		33	1.0
57	33			66	1.0
58	33	66			1.0
59			66	33	1.0
64		66		33	1.0
66			33	66	1.0
70		66	33		1.0
71	33			66	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain

Position	A %	C %	G %	T %	Probability
55		66		33	1.0
57	33			66	1.0
58	33	66			1.0
59			66	33	1.0
64		66		33	1.0
66			33	66	1.0
70		66	33		1.0
71	33			66	1.0

Position	A %	C %	G %	T %	Probability
55		66		33	1.0
57	33			66	1.0
58	33	66			1.0
59			66	33	1.0
64		66		33	1.0
66			33	66	1.0
70		66	33		1.0
71	33			66	1.0

Position	A %	C %	G %	T %	Probability
55		66		33	1.0
57	33			66	1.0
58	33	66			1.0
59			66	33	1.0
64		66		33	1.0
66			33	66	1.0
70		66	33		1.0
71	33			66	1.0