SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17598

Length: 866 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17598

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=3 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	protein phosphatase 2c	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	85%
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	85%
Blast2go	metal ion binding	GO:0046872	Molecular Function	85%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	85%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	85%
Blast2go	mitochondrion	GO:0005739	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	85%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	85%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
144		28		14	1.0
145	14	71		14	0.984337
181		10		90	0.90298
184		10		90	0.90298
186			90	10	0.90298
187			10	90	0.90298
189		10	90		0.90298
192	90			10	0.90298
193	90		10		0.90298
198	10		90		0.90298
199		10	90		0.90298
201		10	90		0.90298
225		10		90	0.90298
340	10		90		0.90298
352		15		84	0.999986
357		83	16		0.999991
361			83	16	0.999991
367			18	81	0.999994
779	10			90	0.90298
782		90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain