SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17595

Length: 1851 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17595

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PLAC8 domain containing protein	-	-	2.0e-26	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	protein	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Uncharacterised protein family Cys-rich	IPR006461	-	0.0	64%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW82

Fln msg:

Fln protein: MEVEKGCKGSQDGEIKGEFAVVNVLQEGGSAICKDGRPSAGHQDCVLESPSEGMPVLDFDVLCATVAMQSENLSFEFQRLSDREAGGGVHRMWEGDLMDCCDDRNIFLRTAFCPFFTFGKNMQRAGFGTCVGQGFVHFLLGICAFSSYIAFGVTKLYSLLYLAIAFTLLMAAYAGYFRTQIRGRFNIKGSDRALDDCLHHLLCSCCTLCQEARTLEMNNVQDGTWHGRGDTILVGTYRESDRSPIELQQPATLTVSPEACSMDKGDHAWNRRSDQAEPLVGSKHDSFL*

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTTTTTTATTAAACTCAAAGGACTGTGTGGAACGGGCTTCGAACCTCGGCGGGCTGATTAGGCATATGCATTTATGATATTTGCTCGTATATATCTGTAAAGACGGGCATTGCAGGCGACATCTAAAAGTCTGTACAGAAAAGCTTTATATAGGAACTCGTGCAATTTTACGGAGATATTTGTATAACTTTTTTTCTTATATGCATCAAATAAGATCAAATGTATAGAATCTTTGAAAACCTTGGTCTGAAATTTGTGCGGCATATTTGTAGCATTTTGCCGTGCATAAAGGTATATGAGAAAACAGTTATAAGCTTTGAATGAAAATTTGGGCAACTGTGAGTTGTAAGGCCGGTGAAATATCTTTACAGTCAAGCTTTGCACAGAAACCTTGCAACGGATTTTTTTGGGGACTGAGTTATAAGGGCCGGGGAATATCAAAATATCTATACCTTGCTACGGAAATCCTTTGAATAGAAATTTGTGCAAGTGTGAGTTGTAAGCGCCGGTCAAATCTTTATGCAACAGCCTTTCTATTTGATAAAAATTTCAAGTG_-_ATGGAGGTCGAGAAAGGCTGCAAAGGATCTCAGGATGGGGAAATCAAAGGCGAGTTTGCGGTGGTTAATGTTTTGCAAGAAGGGGGATCTGCGATTTGTAAGGATGGGAGGCCTAGTGCTGGTCATCAGGATTGTGTCTTGGAATCCCCCAGTGAGGGAATGCCGGTGCTTGATTTTGATGTCCTCTGTGCAACCGTGGCTATGCAAAGTGAAAACTTGTCGTTTGAGTTTCAGAGGTTGTCAGACCGGGAAGCCGGTGGAGGAGTGCATAGGATGTGGGAAGGTGACCTGATGGATTGCTGCGATGACCGCAACATTTTTCTGCGGACAGCTTTCTGCCCATTCTTCACATTTGGAAAGAACATGCAAAGGGCTGGTTTTGGGACATGCGTTGGTCAGGGTTTTGTCCATTTTCTGCTTGGTATATGTGCTTTCTCCAGTTACATTGCTTTTGGAGTGACCAAACTGTATAGCTTGCTGTACCTTGCTATTGCTTTCACTCTCTTAATGGCTGCATATGCTGGGTATTTTCGAACACAAATTCGGGGGCGGTTTAACATCAAGGGTAGTGATAGAGCCCTGGATGACTGCTTGCATCATCTATTGTGTTCATGCTGTACTCTCTGTCAGGAAGCAAGGACATTAGAAATGAATAATGTACAAGATGGTACATGGCATGGTAGAGGTGATACCATATTGGTAGGAACTTATAGAGAGTCTGACAGGTCTCCCATAGAACTTCAGCAGCCTGCAACCTTAACAGTCTCACCTGAGGCATGTAGCATGGACAAGGGTGACCATGCATGGAATAGAAGATCAGATCAAGCAGAGCCTTTAGTTGGATCAAAACACGATTCTTTCTTGTAG___CGGTGTCTAATTTAGACGCTGCTCTGTAATTTTTATGGGTGTAGCTCTTTGTACAAACCAGCTACAACTTCCCAACAATTTATCTTGCAAAAAATGTATTTTCTAGTGTTGTAGTAGCATACAGTTGAATTATGTTCTGTTATAGCAAGCTGCATCAGAGCCATTTCTTTTAAAACTGATTGGTGGTTATTGATGTAGTGACCTAAAACCTGTGCCTTATCCAGTGATTTTCGAGAATAAGGTTTTGAAAGGCCAACTGTTGATCCTGATCAAACCTTATGAAATGAAAGATTGATCTAGGCTGATGCCTTTTACGAGCAACATGTGCCCTGGATTTATTCACAGGTTGCACTTGCATGCATACCCAACTACCCATGAAGGTCACAAGACTGACAATGAAAT

Fln Alignment:

sp_v1.1_unigene17595___MEVEKGCKGSQDGEIKGEFAVVNVLQEGGSAICKDGRPSAGHQDCVLESPSEGMPVLDFDVLCATVAMQSENLSFEFQRLSDREAGGGVHRMWEGDLMDCCDDRNIFLRTAFCPFFTFGKNMQRAGFGTCVGQGFVHFLLGICAFSSYIAFGVTKLYSLLYLAIAFTLLMAAYAGYFRTQIRGRFNIKGSDRAXXXXXXXXXXXXXXXXQEARTLEMNNVQDGTWHGRGDTILVGTYRESDRSPIELQQPATLTVSPEACSMDKGDHAWNRRSDQAEPLVGSKHDSFL
A9NW82_______________MEVQKACKGSQDGEIKGEFAVVNVLQEGGSANCKDGRPSAGYQDCVLDSPGEGMQVLDFDVLCATVAMQSEHLSFEFQRLSDREAGGGVHRMWEGDLMDCCDDRNIFLRTAFCPFFTFGKNMQRAGFGTCVGQGIVHFLLGICALSNYIAFGVTKLYPLLYLAIAFTLLMAAYAGYFRTQMRARFNIKGSDSALDDCLHHLLCSSCTLCQEARTLEMNNVQDGTWHGRGDTILVGSYRESDRSPIELQQSATLTISPEACSMDKNDHSWNRISDQSEPLVGLKHDSFL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
178	88		11		0.923564
1181		20		80	0.995493
1679	14			85	0.993533
1681			14	85	0.993533
1682			14	85	0.993533
1683		85	14		0.993533
1769	33		66		0.997452
1770		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain