SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17594

Length: 832 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17594

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	30S ribosomal protein S13, putative	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	protein	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Protein-synthesizing GTPase.	EC:3.6.5.3	-	0.0	80%

Source	GOs	Term	Type	Identity
Blast2go	translation	GO:0006412	Biological Process	80%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	80%
Blast2go	RNA binding	GO:0003723	Molecular Function	80%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	80%
Blast2go	small ribosomal subunit	GO:0015935	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Blast2go	Ribosomal protein S13	IPR001892	-	80%
Blast2go	Ribosomal protein S13-like, H2TH	IPR010979	-	80%
Blast2go	Ribosomal protein S13, conserved site	IPR018269	-	80%
Blast2go	Ribosomal protein S13, bacterial-type	IPR019980	-	80%

Full-Lengther Next Prediction

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
44	33	66			0.997452
45			66	33	0.997452
47	66		33		0.997452
48	66		33		0.997452
87	80			20	0.995493
88	60			40	1.0
89	60		40		1.0
92		80	20		0.995493
95	20			80	0.995493
369		96		3	0.988113
777		20		80	0.999996
779	14			85	0.993533
780	14			85	0.993533
781	14	85			0.993533
782	20	80			0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain