SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17584

Length: 852 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17584

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7THM2_VITVI	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Blast2go	haloacid dehalogenase-like hydrolase family protein	-	-	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	0.0	76%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	0.0	76%

Source	InterPros	Term	Type	Identity
Blast2go	Haloacid dehalogenase-like hydrolase	IPR005834	-	76%
Blast2go	HAD-superfamily hydrolase, subfamily IA, variant 3	IPR006402	-	76%
Blast2go	Pyrimidine 5-nucleotidase	IPR010237	-	76%
Blast2go	HAD-like domain	IPR023214	-	76%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NL51

Fln msg: Distance to subject end: 20 aas, your sequence is shorter than subject: 257 - 276

Fln protein: MAVDGNLLVTERRPRYDCLLIDLDDTLYPLSSGLAAACSNNIADYVNQKLGVEKSRVPDLCRELYKTYGTTMAGLKAAGYIFDVDDYHRFVHGRLPYESLKPDPVLKNLLLSMPQRKIIFTNGDKVHASKVLQKLGLEDCFEGIICFETLHPHSQTTESNNEWYLSTDNTTIRRTPIICKPSKEAIEQALHLANADPQRTIFFDDSPRNIAAGKRANLHTVLVGTSIRTEGADFALESIHNIREAVPEIWDEEDAES

Protein Length: 258

Fln nts: ACATGGGGGTTCCACTCCATCTCAACCGCAAGTTCGCTCTTGGGCTTCTCTGTCATTCGCATTTGGCTAGAGTGATCGTTA_-_ATGGCGGTGGATGGGAATCTATTGGTAACAGAACGGAGGCCTCGCTATGACTGCCTTCTGATTGATCTGGATGACACATTATATCCGTTGAGTTCCGGACTTGCTGCAGCATGCAGCAACAACATTGCAGATTATGTGAATCAAAAGCTCGGAGTTGAGAAGAGCAGGGTTCCAGATCTGTGCAGAGAGCTATACAAGACTTATGGGACAACCATGGCTGGACTCAAGGCGGCTGGCTATATATTTGACGTTGACGATTACCACAGATTTGTTCACGGAAGACTGCCATATGAGAGTCTTAAACCAGACCCTGTGCTAAAGAACTTGTTATTGAGCATGCCTCAGCGGAAAATTATATTTACAAATGGTGACAAAGTTCATGCCTCAAAGGTCCTTCAGAAGCTGGGGTTGGAAGATTGCTTTGAGGGCATAATATGCTTTGAGACACTTCATCCTCATTCACAAACAACTGAAAGCAATAATGAATGGTATTTGTCCACTGATAACACGACAATCCGGAGGACACCCATAATTTGCAAACCCTCAAAAGAAGCCATAGAACAGGCCCTTCACCTTGCAAATGCTGATCCTCAAAGAACGATATTTTTTGATGACAGTCCGCGGAATATAGCTGCAGGGAAGCGTGCAAACCTGCACACTGTATTGGTGGGCACTTCGATCCGAACAGAGGGAGCAGACTTTGCCCTTGAAAGCATTCACAACATTAGAGAGGCAGTCCCTGAGATATGGGATGAAGAAGATGCAGAGAGC

Fln Alignment:

sp_v1.1_unigene17584___MAVDGNLLVTERRPRYDCLLIDLDDTLYPLSSGLAAACSNNIADYVNQKLGVEKSRVPDLCRELYKTYGTTMAGLKAAGYIFDVDDYHRFVHGRLPYESLKPDPVLKNLLLSMPQRKIIFTNGDKVHASKVLQKLGLEDCFEGIICFETLHPHSQTTESNNEWYLSTDNTTIRRTPIICKPSKEAIEQALHLANADPQRTIFFDDSPRNIAAGKRANLHTVLVGTSIRTEGADFALESIHNIREAVPEIWDEEDAES
A9NL51_______________MALDENRRVTDQRPRYDCLLFDLDDTLYPLSSGLAAACTNNIGDYVNQKLGVEKSRVPDLSRELYKTYGTTMAGLRAIGYEFDYDDYHSFVHGRLPYENLKPDPVLKNLLLSMPQRKIIFTNSDKVHAAKVLNRLGLEDCFEGIICFETLNP-PNITESNNEWGMPTVNSTVPKTPIICKPAKEAMEQALRLANADPQRTIFFDDSPRNIAAGKCAGLHTVLVGTSVRTEGADFALESIHNIREALPEIWEEEDTES

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
10		20		80	0.995493
35		80		20	0.995493
112	16		83		0.994512
186		10		90	0.90298
215	90		10		0.90298
232	10		90		0.90298
436	50		50		1.0
445	87		12		0.992554
446	87		12		0.992554
447			12	87	0.992554
631		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain