SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17583

Length: 1215 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17583

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	tfiif-alpha, putative; K03138 transcription initiation factor TFIIF alpha subunit	-	-	5.0e-37	34%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	47%
Blast2go	transcription initiation factor	-	-	1.34764e-39	61%

Source	GOs	Term	Type	e value	Identity
Blast2go	transcription regulator activity	GO:0030528	Molecular Function	1.34764e-39	61%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	1.34764e-39	61%
Blast2go	nucleus	GO:0005634	Cellular Component	1.34764e-39	61%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Transcription initiation factor IIF, alpha subunit	IPR008851	-	1.34764e-39	61%
Blast2go	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	1.34764e-39	61%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: your sequence is shorter than subject: 284 - 543

Fln protein: RRDLGCHCGRRKKGDDDDDDTVVSDRGEEDEDEEEARKSRLGLNKKGDDDEEGTRGGDVDLDDDEVERGDDWEHEEVFTDDDEAVGNDPAEREDLAPELPAPPEIKQVDDEIGLSPVLAPKQKDIPKEEPIETTPTKEKTSASSSATPTTAKSQKGKRKSGSDDVKSSGAGSTKKLKTEDSKSTAPSTVKEESTPSKNVSSSAKQAPPASNKAVGAQATGAVTEEEVRTALRQMAPVTTQELVAKFKARLKTPDDKSSFAAVLKKISRIQKTNGANFVVLRDK*

Protein Length: 285

Fln nts: CGTCGTGACCTTGGCTGTCACTGCGGTAGACGCAAAAAGGGTGATGATGATGATGATGATACTGTTGTTTCTGACAGAGGAGAGGAGGATGAGGATGAAGAAGAGGCGAGAAAAAGTAGGCTCGGTCTAAATAAAAAAGGTGATGATGATGAGGAAGGGACAAGGGGTGGTGATGTCGATTTGGATGATGATGAAGTAGAGAGAGGAGATGACTGGGAGCACGAAGAAGTATTTACAGATGATGATGAAGCTGTTGGAAATGATCCTGCTGAGAGAGAAGATTTAGCTCCTGAACTTCCAGCCCCACCCGAGATCAAGCAGGTAGATGATGAGATAGGTCTTTCGCCAGTCTTGGCCCCCAAACAGAAAGACATTCCAAAAGAGGAGCCTATAGAGACCACTCCCACTAAAGAAAAGACTTCAGCATCTTCCAGTGCCACACCAACCACAGCAAAATCGCAGAAAGGAAAAAGGAAGTCTGGCAGTGATGATGTAAAATCAAGTGGAGCTGGATCTACAAAGAAATTGAAAACAGAGGATTCAAAGTCCACTGCACCATCCACTGTTAAAGAGGAAAGTACACCATCAAAAAATGTTTCATCTTCTGCAAAGCAGGCACCACCAGCCTCTAACAAGGCTGTTGGTGCACAAGCAACAGGAGCAGTGACAGAGGAAGAAGTGCGGACTGCTTTACGGCAAATGGCTCCAGTCACAACCCAGGAACTTGTAGCAAAATTTAAGGCCAGACTTAAGACCCCGGATGACAAGTCATCATTTGCTGCTGTGTTGAAGAAGATTTCTCGCATCCAAAAAACAAATGGTGCTAACTTTGTTGTGTTGCGAGATAAATGA___AGCAAGTTTTAGCTTTGTGGGAATTTGGTCGATTACTTTTAAACAGCAACATGACATGTTCCTTATCGGTATTCTTGTAGTCTGGCCTGAAACGTTCCATGTGAAATGTGTTGCTCAAATCGTTGCGGTTTAGTTAAAAACCCAATCTCATGGAATTTTGTATTATTGGGTATTTACGAAGGAAGTTTATCCAGTTGCAAGAAGGTAGGTTATTCTAATTTAAAATATCTCATTCAGCATTATAAGTAGATTTCATACCTGAAAGAAGGTAGGTTATTCGAATTTAAAATGATTAAATGAGAAAATTAAGAGTTATTGAAATTGATAAAATGAGGAAATTAAGTGTTGAAAGGTTAAAAGTTT

Fln Alignment:

sp_v1.1_unigene17583___KGKRKSGSDDVKSSGAGSTKKLKTEDS-----KSTAPSTVKEESTPSKNVSSSAKQAPPASNKAVGAQATGAVTEEEVRTALRQMAPVTTQELVAKFKARLKTPDDKSSFAAVLKKISRIQKTNGA-NFVVLRDK
Q9SU25-2_____________KGKRKLNDGDSKKPSSSVQKKVKTENDPKSSLKEERANTVSKSNTPTKAVKAEPASAPASSSSA----ATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISKIQKNAGSQNFVVLREK

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
11			40	60	1.0
13		20	80		0.995493
18	20		20	60	0.99255
19		80	20		0.995493
20	60	20	20		0.99255
21		60	20	20	0.99255
24		16	50		1.0
25	16	50	33		1.0
26	16		50	16	0.988986
27	16		83		0.994512
30		16	83		0.994512
33			83	16	0.994512
178		44		55	1.0
186	88		11		0.923564
214		87		12	0.992554
253	33			66	1.0
301	60		40		1.0
362	75	25			0.996473
363	75		25		0.996473
364	50		50		1.0
366	50		50		1.0
435	50		50		1.0
719	35	64			1.0
731	14		85		0.999981
740	61	38			1.0
742			61	38	1.0
743		38	61		1.0
749	38	61			1.0
759		61		38	1.0
785	38		61		1.0
787		38	61		1.0
816		75		25	0.996473
817	75		25		0.996473
818	75		25		0.996473
819	75	25			0.996473
822			75	25	0.996473
823		25		75	0.996473
824	25		75		0.996473
837		12		87	0.992554
840		12		87	0.992554
842		87		12	0.992554
845		12	87		0.992554
846	87	12			0.992554
848	87			12	0.992554
849	87		12		0.992554
850	87		12		0.992554
853	87			12	0.992554
854	87	12			0.992554
855	12		87		0.992554
857	87			12	0.992554
858	87	12			0.992554
859	12		87		0.992554
1024		9		90	0.999842
1044		50	50		1.0

SSRs (tot: 2)

Start position	End position	Sequence	Length
42	60	TGA TGA TGA TGA TGA TGA T	19
141	152	TGA TGA TGA TGA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain