SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17582

Length: 3782 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17582
CGTCGTGACCTTGGCTGTCACTCAACGTCGTGACCTTGGCTGTCACTCAAGTTTATTTTTGTAGTGTCAAACGGCAGAAAAGCGTACACCTCGTTATATTATAAGGCAAGGGCGCACAAGGGTTTGGAAGACGGATGATCGAATCCTCAGCTGGGAACATACACGTAAAGGCTCTCTGAATTGGCCGATTCGGAGCCTGAATTCGTCTAAATTTCAAGATCTGCAGATCAGGTTCTTCTAATCGATGCCTTATTGGTGCAATTTGGCCCACTTTTGACCAGTTAGCTGCACTATATGCTACCCGAAAAGAGAGCTGCTGGGAGTGAAGCCATAGGGAATTCAGTGAAGAGGCTACGTCCTGAGAGCACTAGTGAGGTGGTAAATCAGGACGTGAACATGGTTGGCGATGGTAACCCGCCTGATGTAGACATAGATGAAGATTTGCATAGCAGACAACTGGCAGTTTATGGGAGGGAGGCTATGCGTCGCCTATTTGGGGCAAATGTTCTTATCTCTAGCCTTCAAGGCCTTGGGGTTGAAGTTGCAAAGAATGTTATACTAGCGGGAGTAAAATCAGTCACTTTGCATGACCAGTCAAATGTTGAAATGTGGGATTTATCTGGCAATTTCTATTTGACCGAAGATGATATTGGCAAAAATCGAGCTGTTGCTTGTTATAATAAGCTACAAGAATTAAATGCTGCTGTTACAGTATCTACTCTGACTTCAGAGATAACTGAAGAAGATCTTTCTTCTTTCCAGGTAGTTGTCTTCACAGACATAACTCTTGAAAAAGCAATTCAATACAATGACTTCTGCCGTGATCATAAACCTCCAATTGCTTTTATTAAAGCAGATATTCGTGGACTATTTGGCAGTGTTTTTTGTGATTTTGGACCAGAGTTTACTGTATTTGATGTGAATGGTGAGGAACCACACACAGGTATCATTGCGTCTGTTAGCAATGATAGTCCTGCTCTTGTTTCATGTGTGGATGATGAGAGGCTTGAATTCCAGGATGGGGATTTAGTTGTTTTTTCTGAAGTACATGGTATGACTCAGTTGAATGATGGGAAGCCAAGAAAGGTAAAGAATGCAAGACCATATTCTTTCCTTTTAGAGGAGGACACGACCAACTTTGGAGCCTATGAGAAGGGTGGTATTGTCACCCAGGTGAAGCAACCAAAGGTGTTAAACTTTAAGTCGCTGAGTGAAGCACTACAAAATCCTGGTGAATTCCTTTTGAGTGATTTTTCCAAATTTGACCGCCCTCCACTTCTACACTTGGCTTTTCAATCTCTTGATAAATTTGTTCATGAGTTCGGACGTTTCCCTTATGCTGCTTCTGAGGAGGATGCCAGTAGATTGATTGACTTCACAAAGGCTTTGAATGACAGCCTGTCAGGTGATCAGAAGTTGGATGTCATTGATGAAAATGTATTGAAGCATTTTGCAAGTGGTTCCCGTGCAGTGTTAAATCCAATGGCAGCTATGTTTGGTGGGATTATTGGGCAGGAGGTTGTGAAAGCATCTTCTGGGAAGTTCCATCCACTTTTCCAGTTCTTTTATTTTGATTCATTGGAATCTCTTCCTCTAGAACCCCTTCAGCCAGAGGATGTTGCACCTTTGAACTGTCGGTATGATGCCCAAATATCTGTATTTGGAAAAAAATTGCAGAAAAAGTTGGAAGAAGCAAAGTTGTTTGTTGTTGGCGCTGGTGCTCTGGGATGTGAGCTTCTAAAAAATTTAGCTCTCATGGGAGCCTCTTCTGGAAGCCATGGAAAACTAACTATAACAGATGATGATGTCATTGAGAAGAGCAATCTCAGTAGACAGTTCCTGTTCCGAGATTGGAACATTGGGCAGGCAAAGTCAACAGTGGCTGCATCAGCGGCAACTGCCATCAATCCACATCTTAAGATTGAAGCATTGCAAAATCGTGTGAGCCCAGATACAGAAAATGTTTTTGATGATTCTTTCTGGGACAACCTTGATGTCATCTTAAATGCTTTGGATAATGTCAACGCCAGGCTTTATGTAGATTCTAGGTGTGTTTACTTCCAGAAACCATTGCTAGAGTCTGGAACTCTGGGAACAAAGTGCAATACTCAAATGGTTATTCCTCACCAAACGGAGAACTATGGAGCATCACGAGATCCCCCAGAAAAGCAGGCACCGATGTGCACTGTTCATTCATTTCCTCATAATATTGACCATTGTCTAACATGGGCAAGGTCAGAATTTGAGGGTTTATTAGAGAAGACTCCAGCTGAGGCAAATGCTTTTCTCATGAAACCAGAAGAATATAAAGCAGCAATGAAGTCAGCAGGAGATGCTCAATCTCGAGAACTTCTGGAGCGTGTTGTTGAGTGTTTGGTTTCAGAGAGATGTGAAACATTTGAAGATTGTATATCTTGGGCAAGAAGAAAGTTTGAGGACTATTTTTCAAATCGAGTGAAGCAGCTTACCTACACATTCCCTGAGAATGCAACAACAAGTGGAGGTGCACCATTCTGGTCTGCTCCAAAGCGTTTTCCAAAGCCCCTAGAGTTTAATTCCAGTGATCCTAGTCACATGTCCTTAATTGCTGCAGCATCAATTTTACGAGCTAATACGTATGGAATTCCCATTCCTGAATGGGCTTCCAATTCAAAGAAGTTAGCAGAGGCAGTCGATAAAGTGCAGATTTCAGCTTTTAAACCAAAGCAGGGGGTGAAAATTGTGACAGATGAGAAGGCTACAAACATGCATCCATCGACAATTGATGATAGTGCAGTGATTGATAATCTAATTAGAACACTAGAAAGCGGGGTGAAGAATCTGTCGTCAGGCTTTCGTATGAGTCCTATTCAGTTTGAAAAGGATGACGATACAAATTATCACATGGATCTTATAGCTGGTTTTGCAAATATGCGTGCAAGGAATTATAGCATACCTGAAGTGGACAAGCTGAAAGCTAAATTCATAGCCGGGAGAATAATTCCTGCAATTGCCACTACAACTGCAATGGCCACTGGTCTAGTGTGTTTGGAACTCTATAAGGTTATATTAAACCACCAAGTTGAGAAGTATCGCAACACTTTTGCAAACCTAGCCCTTCCTCTTTTCTCTATGGCAGAACCTGTACCTCCAAAGATAATTAAACATGGAAATCTGAGCTGGTCTGTCTGGGATCGATGGGTCATTGCTGGGAATCTGACTTTGCGAGAATTGTTAGACTGGTTCCAAGATAAAGGCCTAAGTGCCTACAGTATATCATGCGGGCAAAGTTTGATTTACAATAGCATATTTCCTAAGCATAAAGAACGATTGGATAGAAAAGTTCTAGACCTTGCAAGAGACATAGCAAAGCTAGAAATTCCTCCTGATCGTCGCCATTTTGACATTGTTGTTGCTTGTGAAGATGATGATGGAAATGATGTGGATGTACCTTTGATATCCATATGCTTCAGCTAGGCCCAGTATTTTTAGTTGAAATATTATCAATTGTGGTATTACTAAGCAAAGTTTACCAGGAAAAAATCAGGAATATTTGCTTTTCTTCTGGGAGATCTCAATTTATGAATCTTTTGTAACCACAAAGATTTGCTATATGGTCATCTGTATTCTGGAGGTACCGCTGTGACATGTCACATTGCTAGTATAGCAATGCCATACCTTATATTCACATATAAGGAGGTATATGCTCCTCATTGGGTGTTATAAATGCAGGAAATAACTGATAAATAAAACTTATTTGAGAAACCATTTATTTATATCATTTAATGTGAAATTATGGTTTT

Ace file of the UniGene sp_v1.1_unigene17582

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-activating enzyme E1 n=1 Tax=Physcomitrella patens subsp. patens RepID=A9REZ6_PHYPA	-	-	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	85%

Source	GOs	Term	Type	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	85%
Blast2go	protein modification process	GO:0006464	Biological Process	85%
Blast2go	ATP binding	GO:0005524	Molecular Function	85%
Blast2go	small protein activating enzyme activity	GO:0008641	Molecular Function	85%
Blast2go	ligase activity	GO:0016874	Molecular Function	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU65

Fln msg: your sequence is longer than subject: 1054 - 379

Fln protein: MLPEKRAAGSEAIGNSVKRLRPESTSEVVNQDVNMVGDGNPPDVDIDEDLHSRQLAVYGREAMRRLFGANVLISSLQGLGVEVAKNVILAGVKSVTLHDQSNVEMWDLSGNFYLTEDDIGKNRAVACYNKLQELNAAVTVSTLTSEITEEDLSSFQVVVFTDITLEKAIQYNDFCRDHKPPIAFIKADIRGLFGSVFCDFGPEFTVFDVNGEEPHTGIIASVSNDSPALVSCVDDERLEFQDGDLVVFSEVHGMTQLNDGKPRKVKNARPYSFLLEEDTTNFGAYEKGGIVTQVKQPKVLNFKSLSEALQNPGEFLLSDFSKFDRPPLLHLAFQSLDKFVHEFGRFPYAASEEDASRLIDFTKALNDSLSGDQKLDVIDENVLKHFASGSRAVLNPMAAMFGGIIGQEVVKASSGKFHPLFQFFYFDSLESLPLEPLQPEDVAPLNCRYDAQISVFGKKLQKKLEEAKLFVVGAGALGCELLKNLALMGASSGSHGKLTITDDDVIEKSNLSRQFLFRDWNIGQAKSTVAASAATAINPHLKIEALQNRVSPDTENVFDDSFWDNLDVILNALDNVNARLYVDSRCVYFQKPLLESGTLGTKCNTQMVIPHQTENYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPAEANAFLMKPEEYKAAMKSAGDAQSRELLERVVECLVSERCETFEDCISWARRKFEDYFSNRVKQLTYTFPENATTSGGAPFWSAPKRFPKPLEFNSSDPSHMSLIAAASILRANTYGIPIPEWASNSKKLAEAVDKVQISAFKPKQGVKIVTDEKATNMHPSTIDDSAVIDNLIRTLESGVKNLSSGFRMSPIQFEKDDDTNYHMDLIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATTTAMATGLVCLELYKVILNHQVEKYRNTFANLALPLFSMAEPVPPKIIKHGNLSWSVWDRWVIAGNLTLRELLDWFQDKGLSAYSISCGQSLIYNSIFPKHKERLDRKVLDLARDIAKLEIPPDRRHFDIVVACEDDDGNDVDVPLISICFS*

Protein Length: 1055

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACGTCGTGACCTTGGCTGTCACTCAAGTTTATTTTTGTAGTGTCAAACGGCAGAAAAGCGTACACCTCGTTATATTATAAGGCAAGGGCGCACAAGGGTTTGGAAGACGGATGATCGAATCCTCAGCTGGGAACATACACGTAAAGGCTCTCTGAATTGGCCGATTCGGAGCCTGAATTCGTCTAAATTTCAAGATCTGCAGATCAGGTTCTTCTAATCGATGCCTTATTGGTGCAATTTGGCCCACTTTTGACCAGTTAGCTGCACTAT_-_ATGCTACCCGAAAAGAGAGCTGCTGGGAGTGAAGCCATAGGGAATTCAGTGAAGAGGCTACGTCCTGAGAGCACTAGTGAGGTGGTAAATCAGGACGTGAACATGGTTGGCGATGGTAACCCGCCTGATGTAGACATAGATGAAGATTTGCATAGCAGACAACTGGCAGTTTATGGGAGGGAGGCTATGCGTCGCCTATTTGGGGCAAATGTTCTTATCTCTAGCCTTCAAGGCCTTGGGGTTGAAGTTGCAAAGAATGTTATACTAGCGGGAGTAAAATCAGTCACTTTGCATGACCAGTCAAATGTTGAAATGTGGGATTTATCTGGCAATTTCTATTTGACCGAAGATGATATTGGCAAAAATCGAGCTGTTGCTTGTTATAATAAGCTACAAGAATTAAATGCTGCTGTTACAGTATCTACTCTGACTTCAGAGATAACTGAAGAAGATCTTTCTTCTTTCCAGGTAGTTGTCTTCACAGACATAACTCTTGAAAAAGCAATTCAATACAATGACTTCTGCCGTGATCATAAACCTCCAATTGCTTTTATTAAAGCAGATATTCGTGGACTATTTGGCAGTGTTTTTTGTGATTTTGGACCAGAGTTTACTGTATTTGATGTGAATGGTGAGGAACCACACACAGGTATCATTGCGTCTGTTAGCAATGATAGTCCTGCTCTTGTTTCATGTGTGGATGATGAGAGGCTTGAATTCCAGGATGGGGATTTAGTTGTTTTTTCTGAAGTACATGGTATGACTCAGTTGAATGATGGGAAGCCAAGAAAGGTAAAGAATGCAAGACCATATTCTTTCCTTTTAGAGGAGGACACGACCAACTTTGGAGCCTATGAGAAGGGTGGTATTGTCACCCAGGTGAAGCAACCAAAGGTGTTAAACTTTAAGTCGCTGAGTGAAGCACTACAAAATCCTGGTGAATTCCTTTTGAGTGATTTTTCCAAATTTGACCGCCCTCCACTTCTACACTTGGCTTTTCAATCTCTTGATAAATTTGTTCATGAGTTCGGACGTTTCCCTTATGCTGCTTCTGAGGAGGATGCCAGTAGATTGATTGACTTCACAAAGGCTTTGAATGACAGCCTGTCAGGTGATCAGAAGTTGGATGTCATTGATGAAAATGTATTGAAGCATTTTGCAAGTGGTTCCCGTGCAGTGTTAAATCCAATGGCAGCTATGTTTGGTGGGATTATTGGGCAGGAGGTTGTGAAAGCATCTTCTGGGAAGTTCCATCCACTTTTCCAGTTCTTTTATTTTGATTCATTGGAATCTCTTCCTCTAGAACCCCTTCAGCCAGAGGATGTTGCACCTTTGAACTGTCGGTATGATGCCCAAATATCTGTATTTGGAAAAAAATTGCAGAAAAAGTTGGAAGAAGCAAAGTTGTTTGTTGTTGGCGCTGGTGCTCTGGGATGTGAGCTTCTAAAAAATTTAGCTCTCATGGGAGCCTCTTCTGGAAGCCATGGAAAACTAACTATAACAGATGATGATGTCATTGAGAAGAGCAATCTCAGTAGACAGTTCCTGTTCCGAGATTGGAACATTGGGCAGGCAAAGTCAACAGTGGCTGCATCAGCGGCAACTGCCATCAATCCACATCTTAAGATTGAAGCATTGCAAAATCGTGTGAGCCCAGATACAGAAAATGTTTTTGATGATTCTTTCTGGGACAACCTTGATGTCATCTTAAATGCTTTGGATAATGTCAACGCCAGGCTTTATGTAGATTCTAGGTGTGTTTACTTCCAGAAACCATTGCTAGAGTCTGGAACTCTGGGAACAAAGTGCAATACTCAAATGGTTATTCCTCACCAAACGGAGAACTATGGAGCATCACGAGATCCCCCAGAAAAGCAGGCACCGATGTGCACTGTTCATTCATTTCCTCATAATATTGACCATTGTCTAACATGGGCAAGGTCAGAATTTGAGGGTTTATTAGAGAAGACTCCAGCTGAGGCAAATGCTTTTCTCATGAAACCAGAAGAATATAAAGCAGCAATGAAGTCAGCAGGAGATGCTCAATCTCGAGAACTTCTGGAGCGTGTTGTTGAGTGTTTGGTTTCAGAGAGATGTGAAACATTTGAAGATTGTATATCTTGGGCAAGAAGAAAGTTTGAGGACTATTTTTCAAATCGAGTGAAGCAGCTTACCTACACATTCCCTGAGAATGCAACAACAAGTGGAGGTGCACCATTCTGGTCTGCTCCAAAGCGTTTTCCAAAGCCCCTAGAGTTTAATTCCAGTGATCCTAGTCACATGTCCTTAATTGCTGCAGCATCAATTTTACGAGCTAATACGTATGGAATTCCCATTCCTGAATGGGCTTCCAATTCAAAGAAGTTAGCAGAGGCAGTCGATAAAGTGCAGATTTCAGCTTTTAAACCAAAGCAGGGGGTGAAAATTGTGACAGATGAGAAGGCTACAAACATGCATCCATCGACAATTGATGATAGTGCAGTGATTGATAATCTAATTAGAACACTAGAAAGCGGGGTGAAGAATCTGTCGTCAGGCTTTCGTATGAGTCCTATTCAGTTTGAAAAGGATGACGATACAAATTATCACATGGATCTTATAGCTGGTTTTGCAAATATGCGTGCAAGGAATTATAGCATACCTGAAGTGGACAAGCTGAAAGCTAAATTCATAGCCGGGAGAATAATTCCTGCAATTGCCACTACAACTGCAATGGCCACTGGTCTAGTGTGTTTGGAACTCTATAAGGTTATATTAAACCACCAAGTTGAGAAGTATCGCAACACTTTTGCAAACCTAGCCCTTCCTCTTTTCTCTATGGCAGAACCTGTACCTCCAAAGATAATTAAACATGGAAATCTGAGCTGGTCTGTCTGGGATCGATGGGTCATTGCTGGGAATCTGACTTTGCGAGAATTGTTAGACTGGTTCCAAGATAAAGGCCTAAGTGCCTACAGTATATCATGCGGGCAAAGTTTGATTTACAATAGCATATTTCCTAAGCATAAAGAACGATTGGATAGAAAAGTTCTAGACCTTGCAAGAGACATAGCAAAGCTAGAAATTCCTCCTGATCGTCGCCATTTTGACATTGTTGTTGCTTGTGAAGATGATGATGGAAATGATGTGGATGTACCTTTGATATCCATATGCTTCAGCTAG___GCCCAGTATTTTTAGTTGAAATATTATCAATTGTGGTATTACTAAGCAAAGTTTACCAGGAAAAAATCAGGAATATTTGCTTTTCTTCTGGGAGATCTCAATTTATGAATCTTTTGTAACCACAAAGATTTGCTATATGGTCATCTGTATTCTGGAGGTACCGCTGTGACATGTCACATTGCTAGTATAGCAATGCCATACCTTATATTCACATATAAGGAGGTATATGCTCCTCATTGGGTGTTATAAATGCAGGAAATAACTGATAAATAAAACTTATTTGAGAAACCATTTATTTATATCATTTAATGTGAAATTATGGTTTT

Fln Alignment:

sp_v1.1_unigene17582___MKSAGDAQSRELLERVVECLVSERCETFEDCISWARRKFEDYFSNRVKQLTYTFPENATTSGGAPFWSAPKRFPKPLEFNSSDPSHMSLIAAASILRANTYGIPIPEWASNSKKLAEAVDKVQISAFKPKQGVKIVTDEKATNMHPSTIDDSAVIDNLIRTLESGVKNLSSGFRMSPIQFEKDDDTNYHMDLIAGFANMRARNYSIPEVDKLKAKFXXXXXXXXXXXXXXXXXGLVCLELYKVILNHQVEKYRNTFANLALPLFSMAEPVPPKIIKHGNLSWSVWDRWVIAGNLTLRELLDWFQDKGLSAYSISCGQSLIYNSIFPKHKERLDRKVLDLARDIAKLEIPPDRRHFDIVVACEDDDGNDVDVPLISICF
A9NU65_______________MKSAGDAQARELLERVVECLVSERCETFEDCISWARRKFEDYFSNRVKQLTYTFPENATTSGGAPFWSAPKRFPKPLEFSSNDPSHMSLIAAASILRANTYGIPIPEWASNSKELAEAVDKVQISVFKPKQGVKIVTDEKATNMHPSTIDDSAVIDNLIRTLEIGVKNLSSGFRMSPIQFEKDDDTNYHMDLIAGFANMRARNYSIPEVDKLKAKFIAGRIIPAIATTTAMATGLVCLELYKVILDHKVEKYRNTFANLALPLFSMAEPVPPKIIKHGVLSWSVWDRWVIAGNLTLRELLDWFQDKGLSAYSISCGQSLIYNSIFPKHKERLDRKVVDLARDIAKLEIPPNRRHFDIVVACEDDDGNDVDVPLISICF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
81	75		25		1.0
84		83		16	0.999991
767		15	84		0.999986
769		15		84	0.999986
770	15		84		0.999986
1611	11	88			0.923564
1758	20	80			0.995493
1760		80	20		0.995493
1761	80		20		0.995493
1762			20	80	0.995493
1821	88		11		0.923564
1822	88		11		0.923564
2141	22		77		0.999999
2190	87	4		8	0.999414
2191		91	8		0.999766
2193	8		91		0.999766
2194		8		91	0.999766
2323		7		92	0.999532
3697	94			5	0.998744
3759		12		87	0.992554
3763		16		83	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain