SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17574

Length: 858 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17574 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial n=2 Tax=Arabidopsis RepID=FTSHB_ARATH	-	-	4.0e-10	54%
FL-Next	sp=ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
336		80	20		0.995493
337	20	80			0.995493
338	80		20		0.995493
340	80		20		0.995493
341	20	80			0.995493
343	20	80			0.995493
344			20	80	0.995493
345		20	80		0.995493
346		20		80	0.995493
348	20			80	0.995493
350		80	20		0.995493
352		20		80	0.995493
353	20			80	0.995493
354		20	80		0.995493
355	80		20		0.995493
357		20		80	0.995493
415		25		75	0.996473
416		25	75		0.996473
417	75	25			0.996473
418	75	25			0.996473
523	33			66	1.0
526		66	33		0.997452
527	33	33			0.997753
528		33	66		1.0
530	33	66			1.0
533			33	66	1.0
539	33		66		1.0
541	33	66			1.0
542			33	66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain