SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17555

Length: 1445 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17555

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Mitochondrial substrate carrier family protein n=3 Tax=Arabidopsis RepID=D7M7E8_ARALY	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	mitochondrial carrier protein	-	-	78%

Source	GOs	Term	Type	Identity
Blast2go	transmembrane transport	GO:0055085	Biological Process	78%
Blast2go	mitochondrial transport	GO:0006839	Biological Process	78%
Blast2go	metabolic process	GO:0008152	Biological Process	78%
Blast2go	binding	GO:0005488	Molecular Function	78%
Blast2go	transporter activity	GO:0005215	Molecular Function	78%
Blast2go	mitochondrial inner membrane	GO:0005743	Cellular Component	78%
Blast2go	integral to membrane	GO:0016021	Cellular Component	78%

Source	InterPros	Term	Type	Identity
Blast2go	Mitochondrial carrier protein	IPR002067	-	78%
Blast2go	Mitochondrial substrate/solute carrier	IPR018108	-	78%
Blast2go	Mitochondrial carrier domain	IPR023395	-	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACT4

Fln msg:

Fln protein: MGEEGRVSLPVTEVNWDRLDKAKFYAIGAGLFTGVTVALYPISVVKTRLQVIQRNAENPTAISIFRNILKADGISGLYRGFGAVVIGAVPGRVIFLTTLETTKIGALRVTEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGIDAARKILIADGIRGLYRGFGMSVMTYSPTSAFWWASYGFSQRIIWRSLGYSSEDSSLIPSEGEIILVQAGSGIFAGAIASCTTTPLDTIKTRLQVMDIEDTPSIKQTIKRLIIEDGWKGLYRGLSPRFISMSAWGTSMILAYEYLKRLCAKHE*

Protein Length: 320

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCAAGGGTCACACTTAGAGTCTCCCAATTGCGCTGACCAGCCCAGCCCTGCCCTGCCTCATCTGCAGCCGCAGCAACATTTCGTTAAAACAAGTTTCAACTTTTGGCGTTTGATTGGGTCGTTGGTGATTTTGTGCGAGATTTCGA_-_ATGGGAGAGGAAGGGCGCGTTTCTCTTCCTGTGACAGAAGTTAATTGGGACAGACTTGACAAAGCCAAATTTTATGCAATAGGGGCAGGCCTATTTACGGGTGTCACTGTTGCCCTGTACCCGATTTCTGTTGTTAAGACAAGGCTGCAGGTTATTCAAAGAAATGCTGAAAATCCAACAGCCATTTCTATATTTAGAAACATTCTAAAAGCAGACGGAATTTCTGGTCTATATAGAGGTTTTGGTGCTGTTGTTATTGGTGCAGTTCCTGGTCGGGTAATTTTTCTTACTACCTTAGAGACGACAAAAATTGGAGCTCTAAGAGTCACAGAGAAACTAAATCTTTCAGAGCCAACACAAGTAGCAATAGCAAATGGTGTTGCTGGAATGATGTCATCTCTTGCGGCACAGTCTGTCTTTGTTCCACTTGATGTGGTAAGTCAGAGGCTTATGGTGCAAGGCACTGCTTGTACTGCAAAATACAGTGGTGGTATTGATGCTGCTCGTAAGATTCTTATAGCTGATGGTATTCGTGGATTGTATAGAGGATTTGGTATGTCTGTCATGACATATTCCCCTACCAGTGCTTTTTGGTGGGCTTCTTATGGTTTCAGCCAGCGAATCATTTGGAGGTCTTTAGGTTATAGTAGTGAGGATAGTTCATTGATTCCTAGCGAAGGGGAAATTATATTAGTTCAAGCTGGCAGTGGAATTTTTGCGGGAGCTATAGCATCATGTACAACTACCCCACTTGACACCATCAAGACTCGATTGCAGGTTATGGACATTGAAGACACACCATCTATAAAGCAGACAATTAAAAGGCTAATCATTGAGGATGGATGGAAGGGCTTATATCGGGGACTCAGTCCACGATTTATCAGCATGTCTGCGTGGGGTACATCGATGATATTAGCCTATGAATATCTTAAGCGTTTATGTGCAAAGCATGAGTAG___TGGAAGGAGACTACCTTTTGTCTTTAGATGGTTCTATTCTCTGTGAACCATGTATAAGGTTTTTTGACTTTGTGAGGTATGTTATATTCAATCTTAATAATCTCAAGAGACATTTGTTAGAACATGCATATTCAGTGATCATACTGGAATTGCTGCACAGTGACTCCTCAATATTAAATGGATTAGAGGGATGCATTGTGCTTGCTGACTTGGGGTTGGCTAGATACCAATAGAGAATTCACATTTGGCTAAATTTGTTTGCTGTCTTTGGCTGGTGTACATTGAAAATAATATGAAAGGTTATTTGAAACTATC

Fln Alignment:

sp_v1.1_unigene17555___MGEEGRVSLPVTEVNWDRLDKAKFYAIGAGLFTGVTVALYPISVVKTRLQVIQRNAENPTAISIFRNILKADGISGLYRGFGAVVIGAVPGRVIFLTTLETTKIGALRVTEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGIDAARKILIADGIRGLYRGFGMSVMTYSPTSAFWWASYGFSQRIIWRSLGYSSEDSSLIPSEGEIILVQXXXXXXXXXXXXCTTTPLDTIKTRLQVMDIEDTPSIKQTIKRLIIEDGWKGLYRGLSPRFISMSAWGTSMILAYEYLKRLCAKHE
D5ACT4_______________MGEEGRVPLPAAEINWDRLDKAKFYAIGAGLFTGVTVALYPISVVKTRLQVIQRNAENPTAISIFRNILKADGISGLYRGFGTVVIGAVPGRVIFLTTLETTKIGALRITEKLNLSEPTQVAIANGVAGMMSSLAAQSVFVPLDVVSQRLMVQGTACTAKYSGGLDAARKILMTDGVRGLYRGFGMSVMTYSPSSAFWWASYGFSQRIIWRSLGYSTENSSLTPSQGEIILVQAGGGIFAGAIASCTTTPLDTIKTRLQVMDIESAPSIKQTIERLINEDGWKGLYRGIGPRFISMSAWGTSMILAYEYLKRLCAKPE

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
122		11		88	0.923564
123			11	88	0.923564
124		88		11	0.923564
125	88		11		0.923564
129		11		88	0.923564
137			11	88	0.923564
139		11	88		0.923564
142	11			88	0.923564
148	11		88		0.923564
932		90		10	0.90298
985	87		12		0.992554
1009	87		12		0.992554
1032		88	11		0.923564
1086		11		88	0.923564
1135	83		16		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain