SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17546

Length: 1418 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17546

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RabA24; Rab11/RabA-family small GTPase	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	rab11 -family small gtpase	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	89%
Blast2go	protein transport	GO:0015031	Biological Process	89%
Blast2go	GTP binding	GO:0005525	Molecular Function	89%
Blast2go	hydrolase activity	GO:0016787	Molecular Function	89%
Blast2go	endosome	GO:0005768	Cellular Component	89%
Blast2go	cell plate	GO:0009504	Cellular Component	89%
Blast2go	plasma membrane	GO:0005886	Cellular Component	89%

Source	InterPros	Term	Type	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	89%
Blast2go	Ran GTPase	IPR002041	-	89%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	89%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	89%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	89%
Blast2go	Small GTP-binding protein domain	IPR005225	-	89%
Blast2go	Ras	IPR013753	-	89%
Blast2go	Small GTPase	IPR020851	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACM6

Fln msg:

Fln protein: MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKCDLNHLRAVPIDEAQDFAEKEGLSFMETSALESTNVEKAFQSILAEIYQIVKRKSLAAEEAASSGPSQGTPINVTDPEAVAKKRSCCL*

Protein Length: 216

Fln nts: GATCCATCTGTTGCTTATAGATACGTTACAGTAAATCCTTATTCATAAATTGCAAGAAGCCTAGGAGTCATTTGTGGCCATTTGCATGCTCTGTCTTGATCTCTGTGCATTGGCCAACCCAAAGCCAGGCCATTTTCATCTGTCTAGGTGTTGGGTGACGTGAAAGGGGCTTTCTTTGGTAAATCTTATATTTACCCCGTCAAGACCTAAACCGTCACTCAACTCTTGTACTCAAATTTGATTTTTACAATTTGGGCCTTTCGCACTCTTGTACTCAAATTTGATTTTTACCATTTGGGTCTGTAAGGGAGTGTCATTGATTCTGAAGCCTTTGGGGTATTTACATTTTACAGTGCAATTTTACTGAGTTTTGTGTGTGAGCGCTGGGTTAAGGTTACTGTGAGG_-_ATGGCACGCAAGGTTGATGATGAATACGATTTCTTGTTCAAGGTGGTGTTGATTGGAGATTCAGGAGTCGGGAAGTCGAATCTTCTTTCCAGATTTACTCGAAATGAATTCTGCCTGGAGTCCAAATCTACCATCGGTGTGGAGTTTGCAACTCGAACAATCCAGGTAGATGGCAAGACAATCAAGGCACAAATATGGGATACAGCTGGCCAAGAGAGGTATCGGGCAATCACAAGTGCTTATTACAGAGGTGCTGTGGGAGCTTTGTTGGTGTATGATATTACAAAGAATGCTACTTTTGATAATGTGAAGCGGTGGCTCCGAGAATTGAGAGACCATGCAGATTCAAACATCGTTATCATGTTGGTTGGCAATAAATGTGACCTGAACCATCTGAGAGCTGTGCCAATAGATGAGGCACAGGATTTTGCTGAAAAAGAGGGCCTTTCCTTCATGGAAACATCCGCATTGGAGTCTACAAATGTGGAGAAAGCTTTTCAGTCAATTCTCGCTGAAATCTATCAGATTGTGAAAAGGAAATCTCTTGCAGCAGAAGAGGCAGCCTCTTCTGGGCCTAGTCAGGGAACTCCAATTAATGTCACTGATCCTGAAGCAGTTGCAAAAAAGAGAAGTTGCTGCCTTTAA___GTTTATATGTTTTCCATGTAATCTAGACATTTTAAGTCCATCCAAGTTGTCTAGGATTAATTGCTGTACAGCCAAATATATGTTCTCCGAATTTCCTTGTGTGCTTTGGTTTGTGGTAACTTCTAACATTGGTGAGATTATTTTTATGTACTTTGAGTGTCTGACTAGAGAAGCATGATCGCTAGAATTAAGGAGGATGCCTTGTAAGCTCTGAAAGTTATTTCAGAAGGTGAGCAGTCAGATTTGGTTATTTGTGAGCCATTAGTTAGACAGCAGCAGATGTATTTTTATTTGTTATATTGCAATGGTCTTAGGTTGCATGAATTAAGGAGGATGCCTTGTAAGCTCTGAAAGTTATTTCAGAAGGT

Fln Alignment:

sp_v1.1_unigene17546___MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKCDLNHLRAVPIDEAQDFAEKEGLSFMETSALESTNVEKAFQSILAEIYQIVKRKSLAAEEAASSGPSQGTPINVTDPEAVAKKRSCCL
D5ACM6_______________MARKVDDEYDFLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKNATFDNVKRWLRELRDHADSNIVIMLVGNKSDLSHMRAVPIDDAQDFAEKEGLSFMETSALESTNVEKSFQSILTEIYQIVKRKSLAAEEAASAGPSQGTPINVSDAETIAKKRSCCL

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
347	80		20		0.999996
349			20	80	0.999996
351			20	80	0.999996
354	80	20			0.999996
355			80	20	0.999996
359	80		20		0.999996
360	80	20			0.999996
362			20	80	0.999996
364		20		80	0.999996
368		20	80		0.999996
620	66			33	0.997452
621	66	33			0.997452
626	66			33	0.997452
630	66		33		0.997452
631	33			66	0.997452
633	33		66		0.997452
637	66	33			0.997452
1039	89	10			0.999919
1040	89			10	0.999919
1043		15		85	1.0
1044	10		90		0.999898
1064		4		76	1.0
1124	92		8		0.999718
1125			92	8	0.999718
1127		91	8		0.999766
1128	91			8	0.999766
1129	91		8		0.999766
1131		8		91	0.999766
1132	91	8			0.999766
1140	8			91	0.999766
1143	8		91		0.999766
1153		9	90		1.0
1154	9		6	83	1.0
1155		16	83		1.0
1157	3	6	90		0.997544
1158	6	93			0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain