SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17541

Length: 381 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene17541
TACAGGATAAAAATTACAATAGATCAGATGTGGGGGTCTCTGTAAGCTCTGGAAAATATGAGCATTTGCAGGTTTATCAAGTGCGTTACAGTGGGGGATGGAGCTGTGGGGAAGACATGCTTGCTCATCTCATATACAAGCAACACATTCCCAACTGACTACGTACCCACAGTGTTCGATAACTTCAGTGCAAATGTGGTAGTTGATGGTAACAATGTCAATCTCGGCCTCTGGGATACTGCAGGGCAAGAAGACTACAATAGGTTGAGACCACTGAGTTACAGGGGGACAGACGTGTTCCTCTTGGCGTTTTCCTTGATCAGCAAAGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCTGAACTCAAACATTATGTG

Ace file of the UniGene sp_v1.1_unigene17541

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rho n=5 Tax=core eudicotyledons RepID=Q2XSU1_CAPAN	-	-	1.4013e-45	84%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	rac-like gtp-binding protein 6	-	-	1.4013e-45	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Sphingomyelin phosphodiesterase.	EC:3.1.4.12	-	1.4013e-45	95%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Sphingolipid metabolism	00600		1.4013e-45	95%
Blast2go	Metabolic pathways	01100		1.4013e-45	95%

Source	GOs	Term	Type	e value	Identity
Blast2go	small GTPase mediated signal transduction	GO:0007264	Biological Process	1.4013e-45	95%
Blast2go	sphingomyelin phosphodiesterase activity	GO:0004767	Molecular Function	1.4013e-45	95%
Blast2go	GTP binding	GO:0005525	Molecular Function	1.4013e-45	95%
Blast2go	membrane	GO:0016020	Cellular Component	1.4013e-45	95%
Blast2go	intracellular	GO:0005622	Cellular Component	1.4013e-45	95%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Small GTPase superfamily	IPR001806	-	1.4013e-45	95%
Blast2go	Ras small GTPase, Ras type	IPR003577	-	1.4013e-45	95%
Blast2go	Small GTPase superfamily, Rho type	IPR003578	-	1.4013e-45	95%
Blast2go	Small GTPase superfamily, Rab type	IPR003579	-	1.4013e-45	95%
Blast2go	Small GTP-binding protein domain	IPR005225	-	1.4013e-45	95%
Blast2go	Ras	IPR013753	-	1.4013e-45	95%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NMN4

Fln msg: Distance to subject end: 88 aas, your sequence is shorter than subject: 108 - 196

Fln protein: MSICRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGNNVNLGLWDTAGQEDYNRLRPLSYRGTDVFLLAFSLISKASYENVSKKWIPELKHYV

Protein Length: 109

Fln nts: TACAGGATAAAAATTACAATAGATCAGATGTGGGGGTCTCTGTAAGCTCTGGAAAAT_-_ATGAGCATTTGCAGGTTTATCAAGTGCGTTACAGTGGGGGATGGAGCTGTGGGGAAGACATGCTTGCTCATCTCATATACAAGCAACACATTCCCAACTGACTACGTACCCACAGTGTTCGATAACTTCAGTGCAAATGTGGTAGTTGATGGTAACAATGTCAATCTCGGCCTCTGGGATACTGCAGGGCAAGAAGACTACAATAGGTTGAGACCACTGAGTTACAGGGGGACAGACGTGTTCCTCTTGGCGTTTTCCTTGATCAGCAAAGCCAGTTATGAAAATGTTTCCAAGAAGTGGATTCCTGAACTCAAACATTATGTG

Fln Alignment:

sp_v1.1_unigene17541___MSICRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSAXXXXXXXXXXXXXWDTAGQEDYNRLRPLSYRGTDVFLLAFSLISKASYENVSKKWIPELKHY
A9NMN4_______________MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
285			88	11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain