SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17531

Length: 2968 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17531
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTTTTCAAGACTCGCGAGAAGATATTAACAAACGCGGGTATGTGTTGCGAGGAATAAATTTGGAGACACAGGCAGCGAATGCACTGTTCTTCTCATATAGTATAGGTCGTATTATTATGACCATAGAAGAAGAAACACAGAAGAAGGGTTTGGGGTTTGCTTATTATTCTTACGGGCAAGAAATTGATCCCAACCGAGGAGGACCAGTTAACGAGATCGAGTCTCACTAGACCAATAGTAGCTTGCATTCCTCCCGCCCAGTTGATCATGGCCGCCGTTCCTCCCCCACAGACGCCGCAGCAACAACAACAAGCTGAAGCTGCCGCAATGTCTCCGTGGATGAACGGACCCAACACAGTGGCCACTCCAGCGGTTTCGGGGCACCCTTCCGGGCCTCCTCAAACTCACATGACAGGAAATCCTGCGTCATCTGGACAGCTTCCACCTCGTCCACCTGGCATGGTGTCTTCAGGACCTCAAAACTTTGGACCTCCGCTGCCAATGCAATTTAGATCTGGAGCACCACCACAAACAGGCCAACAATTTATGCCCCCAAGTAGCCAGCAGTTTCGGCCTATGGCTCAAGCTATACCACCACCAAACATGGGAACTGCTCCATCCGTTCAGCCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAGCTCCGCCTTCATCTCAGGCTCCTTCTATGACGTATCTTCAGCAACCAAGGCCAATGACAAGCGGGGCTCCTCCATCTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCACCTCCAACTGGTTTAGGTGGCATGGCACTGCCACCATCATCATCCTATACGTTTGCTCCATCTACCTATGGTCAGTCACAGAATTCATACGGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGCCACTGGTGCATTCTGGAACTCAGCAGTGGGGATCTGCAAATCAAAATAGCGCCCCTGCATCTCAAGGGATGCAGACTGCGCCACAATCCGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTGGTAATTCCAACTTACAAAGTTCTTCAGATTGGCAAGAACATACTACCACTGATGGAAGAAGATATTATTTTAACAAGAAGACAAGGCAGTCAAGTTGGGAGAAGCCTTTAGAATTGATGACACCAATTGAGCGGGCTGATGCATCCACTGTTTGGAAAGAATTTACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACGAAACAATCCAAGTGGACTATTCCTGATGAACTGAAGATCGCTCGAGAGCAAGCAGAAAAAGCAGCATCTTCAGTTGGAAACCCAGAAGGATCATTGTCCACGGTTGCATCACCTGTTCCAGTTGCTGTCACATCATCTCCTTCTAAAGCATCGCCAAATCTATCTGCTGCCAGCATATCTGTATCTACTACAGTGTTAGCATCAACAGGCCCTCCAACAGTTACTGCACCAGTTATGCATCTTTTGCCCACAAACCCAGTTAATGTTATGGCTTCTTTGACACCAACTATTTCTGCATCTGCTGGAGCTGTCTCATCTGCCATGGCCACATCTGTTCTCATAACTTCTCCCGCAATAGGTGTTGTGCCACCAATCACTGCAGCTGCAGTACCGAATGCTACTACTGCGCCATTAACACCAAATGCCGTGGTTCCCACAACTAATGCAGTGCCCACAAGTGTAGTGGAAACTGCAATTGCTGCAACAGTGTCAAATACTGAAAAAGCAAATGGTGGAGATTTAAAGGAAGGAGGAACTGATGAAGCATCTGCACAGGATTTGGAGGAAGCTAAGAAAGCAATGCCTGTAACTGGAAAGATCAATGTAACTCCTCTATCAGAAGAGAAAGCAGTTGACGAGGAGCCTCTAATTTATGCCAATAAAATTGAGGCGAAGAATGCTTTTAAGGAACTTCTAGAATCTGCACATGTAGAAGCTGATTGGACATGGGAACAGGCAATGCGTGTAATCATCAATGACAAGAGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAGCAAGCTTTCAATGAATATTTGGCACAACGAAAAAAACATGAGGCTGAAGAACGGCGCATTCGGCAGAAGCGAGCAAGGGAAGATTTTGTAATTATGTTGGAGGAGTGTAAAGAACTTACATCAGCAACACGATGGAGTAAGGCGGTCTCTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGAGCGAGGAAGAGAAAGGGAGGAGCTCTTTGAGAGCTATCTGATTGAGTTGGAGCGGAAGGAGCGGGACAAGGCACGAGAAGAGCGGAAAAGGAATCTCGTTGAATATAGGGCATATTTAGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGAAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGTTCGCGGTTGGATAAGATAGATCGATTGGAAATTTTCCAGGAGTATATACGTGATTTGGAGAAAGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACAGGGCATCTGGTATTCTTACAGCCAAGACTCACTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCGGCCTATTTGGCTGTTGCATCAAACACATCGGGTTCAACGCCTAAAGAATTGTTTGAAGATGTTGCAGAAGAGCTAGAGAAGCAGTATCATGATGACAAAGCAAGGATAAAAGATGCCATGAAGGCTGGAAAGTTCACAATAACATCAGCATGGACTTTTGACAAATTCAAAGCTTCTATTGCTGAAGCATGTGATTTGGCTGCTGTATCTGAATCAAACCTTAAGCTTGTGTTTGAAGAAGTGATGG

Ace file of the UniGene sp_v1.1_unigene17531

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein binding protein, putative; K12821 pre-mRNA-processing factor 40	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Blast2go	protein binding	-	-	69%

Source	GOs	Term	Type	Identity
Blast2go	RNA splicing	GO:0008380	Biological Process	69%
Blast2go	RNA polymerase binding	GO:0070063	Molecular Function	69%
Blast2go	plastid	GO:0009536	Cellular Component	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	WW/Rsp5/WWP	IPR001202	-	0.0	69%
Blast2go	FF domain	IPR002713	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P265

Fln msg:

Fln protein: MTRDMEPSKPLESVSKLSMNIWHNEKNMRLKNGAFGRSEQGKIL*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTTTTCAAGACTCGCGAGAAGATATTAACAAACGCGGGTATGTGTTGCGAGGAATAAATTTGGAGACACAGGCAGCGAATGCACTGTTCTTCTCATATAGTATAGGTCGTATTATTATGACCATAGAAGAAGAAACACAGAAGAAGGGTTTGGGGTTTGCTTATTATTCTTACGGGCAAGAAATTGATCCCAACCGAGGAGGACCAGTTAACGAGATCGAGTCTCACTAGACCAATAGTAGCTTGCATTCCTCCCGCCCAGTTGATCATGGCCGCCGTTCCTCCCCCACAGACGCCGCAGCAACAACAACAAGCTGAAGCTGCCGCAATGTCTCCGTGGATGAACGGACCCAACACAGTGGCCACTCCAGCGGTTTCGGGGCACCCTTCCGGGCCTCCTCAAACTCACATGACAGGAAATCCTGCGTCATCTGGACAGCTTCCACCTCGTCCACCTGGCATGGTGTCTTCAGGACCTCAAAACTTTGGACCTCCGCTGCCAATGCAATTTAGATCTGGAGCACCACCACAAACAGGCCAACAATTTATGCCCCCAAGTAGCCAGCAGTTTCGGCCTATGGCTCAAGCTATACCACCACCAAACATGGGAACTGCTCCATCCGTTCAGCCACAGCCTGTGCAGTATCCTCCACAAATGCAACATTTGCCTCCACGTCCAGGGCAACAACAACAAGCTCCGCCTTCATCTCAGGCTCCTTCTATGACGTATCTTCAGCAACCAAGGCCAATGACAAGCGGGGCTCCTCCATCTCAGCAGCCTCAGCAATCTCAACAGCCTCTTAGTATGCCACCTCCAACTGGTTTAGGTGGCATGGCACTGCCACCATCATCATCCTATACGTTTGCTCCATCTACCTATGGTCAGTCACAGAATTCATACGGTGTTAATCCACAATATCAAGCTGTTTCTCAGCCTCAACACATGCCACTGGTGCATTCTGGAACTCAGCAGTGGGGATCTGCAAATCAAAATAGCGCCCCTGCATCTCAAGGGATGCAGACTGCGCCACAATCCGCTGTTGGTTTTGCTTCAGCTCCTGGAGCTGTTGTACAACCTGGTAATTCCAACTTACAAAGTTCTTCAGATTGGCAAGAACATACTACCACTGATGGAAGAAGATATTATTTTAACAAGAAGACAAGGCAGTCAAGTTGGGAGAAGCCTTTAGAATTGATGACACCAATTGAGCGGGCTGATGCATCCACTGTTTGGAAAGAATTTACAACTCCAGAGGGGCGAAAGTACTATTACAACAAGGTCACGAAACAATCCAAGTGGACTATTCCTGATGAACTGAAGATCGCTCGAGAGCAAGCAGAAAAAGCAGCATCTTCAGTTGGAAACCCAGAAGGATCATTGTCCACGGTTGCATCACCTGTTCCAGTTGCTGTCACATCATCTCCTTCTAAAGCATCGCCAAATCTATCTGCTGCCAGCATATCTGTATCTACTACAGTGTTAGCATCAACAGGCCCTCCAACAGTTACTGCACCAGTTATGCATCTTTTGCCCACAAACCCAGTTAATGTTATGGCTTCTTTGACACCAACTATTTCTGCATCTGCTGGAGCTGTCTCATCTGCCATGGCCACATCTGTTCTCATAACTTCTCCCGCAATAGGTGTTGTGCCACCAATCACTGCAGCTGCAGTACCGAATGCTACTACTGCGCCATTAACACCAAATGCCGTGGTTCCCACAACTAATGCAGTGCCCACAAGTGTAGTGGAAACTGCAATTGCTGCAACAGTGTCAAATACTGAAAAAGCAAATGGTGGAGATTTAAAGGAAGGAGGAACTGATGAAGCATCTGCACAGGATTTGGAGGAAGCTAAGAAAGCAATGCCTGTAACTGGAAAGATCAATGTAACTCCTCTATCAGAAGAGAAAGCAGTTGACGAGGAGCCTCTAATTTATGCCAATAAAATTGAGGCGAAGAATGCTTTTAAGGAACTTCTAGAATCTGCACATGTAGAAGCTGATTGGACATGGGAACAGGCAATGCGTGTAATCATCA_-_ATGACAAGAGATATGGAGCCCTCAAAACCCTTGGAGAGCGTAAGCAAGCTTTCAATGAATATTTGGCACAACGAAAAAAACATGAGGCTGAAGAACGGCGCATTCGGCAGAAGCGAGCAAGGGAAGATTTTGTAA___TTATGTTGGAGGAGTGTAAAGAACTTACATCAGCAACACGATGGAGTAAGGCGGTCTCTCTCTTTGAAAACGATGCAAGGTTCCATGCTGTTGAGCGAGGAAGAGAAAGGGAGGAGCTCTTTGAGAGCTATCTGATTGAGTTGGAGCGGAAGGAGCGGGACAAGGCACGAGAAGAGCGGAAAAGGAATCTCGTTGAATATAGGGCATATTTAGAGTCTTGTGATTTCATAAAGGCTAATACTCAATGGAGAAAAGTACAAGATCGGCTAGAAGATGATGAGAGATGTTCGCGGTTGGATAAGATAGATCGATTGGAAATTTTCCAGGAGTATATACGTGATTTGGAGAAAGAAGAAGAAGAAGAAAGGAGGATTCAAAAGGAACAATTACGACGTAAGGAGCGTAAGAACCGTGATGAATTTCGAAAGTTAATGGAGGAACACAGGGCATCTGGTATTCTTACAGCCAAGACTCACTGGCGTGATTACTGTGGCAAGGTTAAGGATTACCCGGCCTATTTGGCTGTTGCATCAAACACATCGGGTTCAACGCCTAAAGAATTGTTTGAAGATGTTGCAGAAGAGCTAGAGAAGCAGTATCATGATGACAAAGCAAGGATAAAAGATGCCATGAAGGCTGGAAAGTTCACAATAACATCAGCATGGACTTTTGACAAATTCAAAGCTTCTATTGCTGAAGCATGTGATTTGGCTGCTGTATCTGAATCAAACCTTAAGCTTGTGTTTGAAGAAGTGATGG

Fln Alignment:

sp_v1.1_unigene17531___MTRDMEPSKPLESVSKLSMNIWHNEKNMRLKNGAFGRSEQGKIL
A9P265_______________MISDMEPSKPWESVNKLSMNIWHSERNMKLKNGAFGRREHGKIL

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
63	10			90	0.90298
64	20			80	0.999996
65	90		10		0.90298
66	90		10		0.90298
67		90	10		0.90298
398	41		58		1.0
471			90	10	0.90298
473	90		10		0.90298
475	90			10	0.90298
478	10			90	0.90298
479			10	90	0.90298
484		90		10	0.90298
522			22	77	0.999999
524		22		77	0.999999
531		77		22	0.999999
532		77	22		0.999999
537		77		22	0.999999
540	75	25			1.0
605		10	90		0.90298
606		10		90	0.90298
615	90		10		0.90298
617		10	90		0.90298
618	10		90		0.90298
2203	88		11		0.923564
2319	80		20		0.995493
2364	66		33		0.997452
2415	25		75		0.996473
2546	90		10		0.90298
2547			10	90	0.90298

SSRs (tot: 3)

Start position	End position	Sequence	Length
337	348	CAA CAA CAA CAA	12
718	729	CAA CAA CAA CAA	12
2558	2574	AAG AAG AAG AAG AAG AA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain