SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17529

Length: 2335 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17529
ATGGGGGGCGGGAGGATAAGATGGTGGACACATGGAGGCTATGGAGGAGCTGAGCCGAGCCGAGCGATGCTGGAGTAAAGAGGGTAGGTGGGTGGGCCAATCGGGCCCTTTGCCAGCTGCGCCCACTTACTGTCACTGCCCCTGCTTCTGTATTTTGCTCTCTTCCCTTCTGTAAGGAGCTCCAGGTCCGGATGCCCTTCTTATTATGACTCCATTTCATTTGACAATGTGTGGCTAAAGATTAAACGCGGGATGCTTTTTCATGTCACTGTACGGGGAGAGGTTTTGGGTTCGAGTCCCTTTGAGTGAACAGTTTTGCAATTAGGGTTTTAGTAGCATCAGTCAGCATGAGACGGGTGCGCTTCTTCTTCTTTTCCAGCATCCCCACGGTGGTCCTCTGCTCCTGGTTTCTTAATGCATTCCAGGCTTTATCATTAACAGAATTTGGCGCAAGTCGTACTTCAGATGTTGCATTAGTTGTGGGCCAGCCTGTTTCCTCTCCATTCAACTCCTCGTTGTTTCACTTAGCTGTTTCGACGGCTCGTGCCGAGGAAAAGGACAACAATCTTCTGCCTGTGGCTTCTGCCCCTAGTGCTGCTCCTGATGCATTGATGCCATTGCTTGCTCCTTCTCCCATACACCCTTTCTCTCCAAATGGAACTGTGCCAGTCTTATCAGGGCTTTGTGCTTTCAATTTTTCAGCAGCAGCACATATAGTAAGTGAAACAGCAACTGACTGTTGGAGTTCACTTGCACCATATCTGGGCAATGTGATTTGCTGTCCACAGCTGGAGACAATGTTTCATATCCTTATTGGGGAGTCCAGCAAAGTCAATGGGCAGCTTGCTTTGAATACAACTACTGCAGATTACTGTTTTTCAGATGTTCAACGTATCTTGACTAGTGAGGGTGCAAATGGAAGTCTTCCTTTGATTTGTTCTGCTCAACCATCGAATCTCACTGAAGGCTCTTGTCCTGTTAAGAATGTAAAAGAGGTTGAACAAGCAATTAATGGGAGTAAACTTTTGACTGATTGCAAAACAGTGGATCCAGTGAAAGAATGCTGCAACCCTGTTTGTCAGCCTGCCATCTCAGAAGCTGCAAGAAGACTTGCTTTGAAGGTGCCTGGGTTATTTAGTCCAGATGATGTGCGAGTGTCACCCGTTCAACAATCTGTAGTGGATGATTGTCAGAATGTTGTCCTTCGATGGCTGGCAAGCCAGCTTACCTCAGACAAAGCCAAATCAGTTCTCAGAGTGCTTTTCAATTGCAATGTGAACAGAGTCTGTCCTTTGATTTTCCCCGACCCTTCAGAGGTGGCAAGAAACTGTGCTAACACTGTTAAAAATGCAACAAAATGCTGCATGACACTGGACAATTATATTTCTGGAGTTCAACAACAAAGCCTCATTACAAATTTGCAAGGTTTAAACTGTGCTGCCTCTCTTGGTATGATGCTTCAAAGAAGGAACATCACAGAGAACGTGTACAACCTTTGCCATGTAAATCTGAAGGACTTTTCTCTTCAAGCTTTTGGATCACAAGATGCGGGCTGTCTTCTTCGAAGTTTGCCTTCTGATGTTACGGACGAGACATCATCTGGAATAAGTTTCACATGTGATCTGAATGATAATATAGCTGCTCCTTGGCCTCCTGTTTCTCATGCATCAACTCCTTCCTCCTGCGATAAACCAATCACCATGCCAGCATTTCCAGCTGCAACATCAGCCTGGAATGGACAAAGTCGAGCATTTATGATCATCTTTCTGCTTCCAGCTCTGTGTTTAGCAATGATGATGCCTTAAACACAACTGCTATATATTGGGACACAGTTGGAGCTAGTATCAATTCTTGCTTACTGATGATCGTGTTGAGTGTATACACAGTTCGGCTTTTATGGTTCATCCATACTTGTCAGCATTACAAGAAGATTTGGAAGATTTAATGCTGACATGATGGTGCATCAAAGGTGTTTCTTGCAAATCAAAGGGCACCTTTGGTGGCGTTGTGTGTAAGATGTACATTCAGTTGATTATAAGATATGAATATAGCATATACTTTCTGGAGGCACTGTTTCAGGCTTTTTGCAACTTGGAGATGAACATTTTTATGTTCAGTTTATGTGTTATGTAATTATTGTTTTCCAAATTGTATTGGATACTGGAAATTTTCAATCTATTGTATTAAATCCAAATCTTCTCGACATTTTACCCTATTTTAGATTTATCACAGTACCTATTTGGTTATGCCCATGGATATTGCAAGGGATCTGACATTCCTGTTAAAATGACATTATGATGCTTTTGCAACTGCTGCACATTCACTCATAATTGAC

Ace file of the UniGene sp_v1.1_unigene17529

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Uncharacterized GPI-anchored protein At1g61900; Arabidopsis thaliana (Mouse-ear cress).	-	-	50%
Blast2go	ugpi6_arath ame: full=uncharacterized gpi-anchored protein at1g61900 flags: precursor	-	-	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytoplasmic membrane-bounded vesicle	GO:0016023	Cellular Component	0.0	67%
Blast2go	anchored to plasma membrane	GO:0046658	Cellular Component	0.0	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8GUI4

Fln msg: your sequence is longer than subject: 486 - 433

Fln protein: MRRVRFFFFSSIPTVVLCSWFLNAFQALSLTEFGASRTSDVALVVGQPVSSPFNSSLFHLAVSTARAEEKDNNLLPVASAPSAAPDALMPLLAPSPIHPFSPNGTVPVLSGLCAFNFSAAAHIVSETATDCWSSLAPYLGNVICCPQLETMFHILIGESSKVNGQLALNTTTADYCFSDVQRILTSEGANGSLPLICSAQPSNLTEGSCPVKNVKEVEQAINGSKLLTDCKTVDPVKECCNPVCQPAISEAARRLALKVPGLFSPDDVRVSPVQQSVVDDCQNVVLRWLASQLTSDKAKSVLRVLFNCNVNRVCPLIFPDPSEVARNCANTVKNATKCCMTLDNYISGVQQQSLITNLQGLNCAASLGMMLQRRNITENVYNLCHVNLKDFSLQAFGSQDAGCLLRSLPSDVTDETSSGISFTCDLNDNIAAPWPPVSHASTPSSCDKPITMPAFPAATSAWNGQSRAFMIIFLLPALCLAMMMP*

Protein Length: 487

Fln nts: ATGGGGGGCGGGAGGATAAGATGGTGGACACATGGAGGCTATGGAGGAGCTGAGCCGAGCCGAGCGATGCTGGAGTAAAGAGGGTAGGTGGGTGGGCCAATCGGGCCCTTTGCCAGCTGCGCCCACTTACTGTCACTGCCCCTGCTTCTGTATTTTGCTCTCTTCCCTTCTGTAAGGAGCTCCAGGTCCGGATGCCCTTCTTATTATGACTCCATTTCATTTGACAATGTGTGGCTAAAGATTAAACGCGGGATGCTTTTTCATGTCACTGTACGGGGAGAGGTTTTGGGTTCGAGTCCCTTTGAGTGAACAGTTTTGCAATTAGGGTTTTAGTAGCATCAGTCAGC_-_ATGAGACGGGTGCGCTTCTTCTTCTTTTCCAGCATCCCCACGGTGGTCCTCTGCTCCTGGTTTCTTAATGCATTCCAGGCTTTATCATTAACAGAATTTGGCGCAAGTCGTACTTCAGATGTTGCATTAGTTGTGGGCCAGCCTGTTTCCTCTCCATTCAACTCCTCGTTGTTTCACTTAGCTGTTTCGACGGCTCGTGCCGAGGAAAAGGACAACAATCTTCTGCCTGTGGCTTCTGCCCCTAGTGCTGCTCCTGATGCATTGATGCCATTGCTTGCTCCTTCTCCCATACACCCTTTCTCTCCAAATGGAACTGTGCCAGTCTTATCAGGGCTTTGTGCTTTCAATTTTTCAGCAGCAGCACATATAGTAAGTGAAACAGCAACTGACTGTTGGAGTTCACTTGCACCATATCTGGGCAATGTGATTTGCTGTCCACAGCTGGAGACAATGTTTCATATCCTTATTGGGGAGTCCAGCAAAGTCAATGGGCAGCTTGCTTTGAATACAACTACTGCAGATTACTGTTTTTCAGATGTTCAACGTATCTTGACTAGTGAGGGTGCAAATGGAAGTCTTCCTTTGATTTGTTCTGCTCAACCATCGAATCTCACTGAAGGCTCTTGTCCTGTTAAGAATGTAAAAGAGGTTGAACAAGCAATTAATGGGAGTAAACTTTTGACTGATTGCAAAACAGTGGATCCAGTGAAAGAATGCTGCAACCCTGTTTGTCAGCCTGCCATCTCAGAAGCTGCAAGAAGACTTGCTTTGAAGGTGCCTGGGTTATTTAGTCCAGATGATGTGCGAGTGTCACCCGTTCAACAATCTGTAGTGGATGATTGTCAGAATGTTGTCCTTCGATGGCTGGCAAGCCAGCTTACCTCAGACAAAGCCAAATCAGTTCTCAGAGTGCTTTTCAATTGCAATGTGAACAGAGTCTGTCCTTTGATTTTCCCCGACCCTTCAGAGGTGGCAAGAAACTGTGCTAACACTGTTAAAAATGCAACAAAATGCTGCATGACACTGGACAATTATATTTCTGGAGTTCAACAACAAAGCCTCATTACAAATTTGCAAGGTTTAAACTGTGCTGCCTCTCTTGGTATGATGCTTCAAAGAAGGAACATCACAGAGAACGTGTACAACCTTTGCCATGTAAATCTGAAGGACTTTTCTCTTCAAGCTTTTGGATCACAAGATGCGGGCTGTCTTCTTCGAAGTTTGCCTTCTGATGTTACGGACGAGACATCATCTGGAATAAGTTTCACATGTGATCTGAATGATAATATAGCTGCTCCTTGGCCTCCTGTTTCTCATGCATCAACTCCTTCCTCCTGCGATAAACCAATCACCATGCCAGCATTTCCAGCTGCAACATCAGCCTGGAATGGACAAAGTCGAGCATTTATGATCATCTTTCTGCTTCCAGCTCTGTGTTTAGCAATGATGATGCCTTAA___ACACAACTGCTATATATTGGGACACAGTTGGAGCTAGTATCAATTCTTGCTTACTGATGATCGTGTTGAGTGTATACACAGTTCGGCTTTTATGGTTCATCCATACTTGTCAGCATTACAAGAAGATTTGGAAGATTTAATGCTGACATGATGGTGCATCAAAGGTGTTTCTTGCAAATCAAAGGGCACCTTTGGTGGCGTTGTGTGTAAGATGTACATTCAGTTGATTATAAGATATGAATATAGCATATACTTTCTGGAGGCACTGTTTCAGGCTTTTTGCAACTTGGAGATGAACATTTTTATGTTCAGTTTATGTGTTATGTAATTATTGTTTTCCAAATTGTATTGGATACTGGAAATTTTCAATCTATTGTATTAAATCCAAATCTTCTCGACATTTTACCCTATTTTAGATTTATCACAGTACCTATTTGGTTATGCCCATGGATATTGCAAGGGATCTGACATTCCTGTTAAAATGACATTATGATGCTTTTGCAACTGCTGCACATTCACTCATAATTGAC

Fln Alignment:

sp_v1.1_unigene17529___NGTVPVLSGLCAFNFSAAAHIVSETATDCWSSLAPYLGNVICCPQLETMFHILIGESSKVNGQLALNTTTADYCFSDVQRILTSEGANGSLPLICSAQPSNLTEGSCPVKNVKEVEQAINGSKLLTDCKTVDPVKECCNPVCQPAISEAARRLALKVPGLFSPDDVRVSPVQQSVVDDCQNVVLRWLASQLTSDKAKSVLRVLFNCNVNRVCPLIFPDPSEVARNCANTVKNATKCCMTLDNYISGVQQQSLITNLQGLNCAASLGMMLQRRNITENVYNLCHVNLKDFSLQAFGSQDAGCLLRSLPSDVTDETSSGISFTCDLNDNIAAPWPPVSHASTPSSCDKPITMPAFPAATSA
Q8GUI4_______________NSTMPKLSGLCSLNFSASESLIQTTSHNCWTVFAPLLANVMCCPQLDATLTIILGKASKETGLLALNRTQSKHCLSDLEQILVGKGASGQLNKICSIHSSNLTSSSCPVINVDEFESTVDTAKLLLACEKIDPVKECCEEACQNAILDAATNISLKASETLTDNSDR--------INDCKNVVNRWLATKLDPSRVKETLRGLANCKINRVCPLVFPHMKHIGGNCSNELSNQTGCCRAMESYVSHLQKQTLITNLQALDCATSLGTKLQKLNITKNIFSVCHISLKDFSLQV-GNQESGCLLPSLPSDAIFDKDTGISFTCDLNDNIPAPWPS-SSLSSASTCKKPVRIPALPAAASS

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
341		88	11		0.923564
342	88		11		0.923564
344			11	88	0.923564
525		25	75		1.0
1495		25		75	0.996473
1894	60	20			0.99255
1895		20		80	0.995493
2065	50			50	1.0
2125			60	40	1.0
2156		11		88	0.923564
2197	14			85	0.993533
2198	14	85			0.993533
2199	14			85	0.993533
2200	14			85	0.993533
2252		66	33		0.997452
2253	33	66			0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
362	373	CTT CTT CTT CTT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain