SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17526

Length: 443 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf

UniGene Fasta

>sp_v1.1_unigene17526
ATGGGGGCATTAAGCATGGCAGTGGTCAGAGTATTTCTCCTGAACCGGGAGAATACGTGGGAGAGAGATCAGAGGGTGCAAGAGGAAAATCAAAGAGTTCCGTCGTGACCTTGGCTGTCACTCATATTGGTGGTGTTTCGGGGAAAGATGATGTAAGAAGAGATGAACAGTATGACGTGGATTTGAATCAACGAGAGCTTATGGAACTGGATGATGGCAACAATAGTGAAGATGATAGTATTGGACAAGCACCTGAATCAGAGTCTAATGACGAGACGAAGTCCTCGATTCAACCTGAGATTCCACTCGCACAACGAATGATTGATATGCTACAAGGTTGCAGAAGTGTCGATGAATTTGAGAGGCTTAACAAGATAGACGAAGGCACATATGGAGTTGTGTACAGAGCTAAGAATAAGAAAACTGGGGAGATAGTCGCTCTG

Ace file of the UniGene sp_v1.1_unigene17526

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[RTKL] COG0515 Serine/threonine protein kinase	-	-	4.0e-06	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	protein	-	-	0.0	65%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	65%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	65%
Blast2go	ATP binding	GO:0005524	Molecular Function	65%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	65%
Blast2go	cytosol	GO:0005829	Cellular Component	65%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	0.0	65%
Blast2go	Protein kinase-like domain	IPR011009	-	0.0	65%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQV9

Fln msg: Distance to subject end: 136 aas, your sequence is shorter than subject: 147 - 693

Fln protein: GGIKHGSGQSISPEPGEYVGERSEGARGKSKSSVVTLAVTHIGGVSGKDDVRRDEQYDVDLNQRELMELDDGNNSEDDSIGQAPESESNDETKSSIQPEIPLAQRMIDMLQGCRSVDEFERLNKIDEGTYGVVYRAKNKKTGEIVAL

Protein Length: 148

Fln nts: ATGGGGGCATTAAGCATGGCAGTGGTCAGAGTATTTCTCCTGAACCGGGAGAATACGTGGGAGAGAGATCAGAGGGTGCAAGAGGAAAATCAAAGAGTTCCGTCGTGACCTTGGCTGTCACTCATATTGGTGGTGTTTCGGGGAAAGATGATGTAAGAAGAGATGAACAGTATGACGTGGATTTGAATCAACGAGAGCTTATGGAACTGGATGATGGCAACAATAGTGAAGATGATAGTATTGGACAAGCACCTGAATCAGAGTCTAATGACGAGACGAAGTCCTCGATTCAACCTGAGATTCCACTCGCACAACGAATGATTGATATGCTACAAGGTTGCAGAAGTGTCGATGAATTTGAGAGGCTTAACAAGATAGACGAAGGCACATATGGAGTTGTGTACAGAGCTAAGAATAAGAAAACTGGGGAGATAGTCGCTCTG

Fln Alignment:

sp_v1.1_unigene17526___IKHGSGQSISPEPGEYVGERSEGARGKSKSSVVTLAVTHIGGVSGKDDVRRDEQYDVDLNQRELMELDDGNNSEDDSIGQAPESESNDETKSSIQPEIPLAQRMIDMLQGCRSVDEFERLNKIDEGTYGVVYRAKNKKTGEIVAL
B8LQV9_______________IKHGSGQSISPEPGECMGERSEGARGKSKSSEDD-AGQGIGGVPGKDDVRRDEQYDLELNQRELMDLDDGNNSEDDSIGQPHESESHDEPKSSILPEIPLAQRMIDMLQGCRSVDEFERLNKIDEGTYGVVYRAKNKKTGEIVAL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
443	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain