SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17513

Length: 1284 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17513

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PII-like protein n=1 Tax=Pinus pinaster RepID=Q70YP6_PINPS	-	-	86%
FL-Next	tr=PII-like protein; Pinus pinaster (Maritime pine).	-	-	96%
Blast2go	pii protein	-	-	86%

Source	GOs	Term	Type	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	86%
Blast2go	response to sucrose stimulus	GO:0009744	Biological Process	86%
Blast2go	anthocyanin biosynthetic process	GO:0009718	Biological Process	86%
Blast2go	response to light stimulus	GO:0009416	Biological Process	86%
Blast2go	regulation of cellular transcription, DNA-dependent	GO:0045449	Biological Process	86%
Blast2go	regulation of nitrogen utilization	GO:0006808	Biological Process	86%
Blast2go	acetylglutamate kinase regulator activity	GO:0010307	Molecular Function	86%
Blast2go	oxygen transporter activity	GO:0005344	Molecular Function	86%
Blast2go	oxygen binding	GO:0019825	Molecular Function	86%
Blast2go	protein binding	GO:0005515	Molecular Function	86%
Blast2go	cell wall	GO:0005618	Cellular Component	86%
Blast2go	chloroplast	GO:0009507	Cellular Component	86%
Blast2go	plasma membrane	GO:0005886	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Blast2go	Nitrogen regulatory protein PII	IPR002187	-	86%
Blast2go	Nitrogen regulatory PII-like, alpha/beta	IPR011322	-	86%
Blast2go	Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal	IPR015867	-	86%
Blast2go	Nitrogen regulatory protein PII, conserved site	IPR017918	-	86%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q70YP6

Fln msg:

Fln protein: MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRISHVTTGLLKMGIRGVTVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEILTGVHQDVTDSN*

Protein Length: 239

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTGTAAATCCGAGTATTGCGTAAATTAAAAGCGAAATATAAAAGGCAAAGGTACTTGTTCGCATGGGGATATGTATAATTCTGGGCTGGTTTGTGAAAGAAATGTGTAGCGAGCTCTGCTACCAAAGTTGCCCCGTGTTGCACACGAGTAGGGCTAGTTACCAGTAATAAAC_-_ATGGCTGCCCATCTGCCTCTATTTGTCAAAGGATCTATATTTTCTCTACCATCATCGACATCGACGTCTTCTTCCTGTACGTATTCGAGCATATCGCATACAGCGGCATCTCCTGGATTTCACTCATCTCCAGCAGCAGCCAATAAATCTGTAAAATTGGGAACGATGCAGAGGATGGATGGTGTCAGGTCGGTGAAGCACCGAATGACAAGTCTGCATGCAAAGATGGAGAAGAGGCAACAGATTAAGGCATCGGCCCAGGCACCAAATGGGACCAACACTCATCCAGATTATGTCCCAGAAGCCAACTTTTACAAAGTAGAAGCAATATTGAGGCCATGGCGCATCTCCCATGTGACTACGGGTCTATTGAAAATGGGGATTCGTGGCGTAACTGTCTCTGATGTTAGAGGTTTTGGAGTTCAGGCTGGATCTGCAGAACGGCAAGCAGGCTCCGAGTTTTCTAAAGACAATTTTGTGTCAAAAGTAAAGATGGAGATTGTGGTATCTAAAGATCAGGTAGAAGCAGTAATTGATGCAATCATTGATGAGGCAAGAACTGGAGAAATTGGAGATGGAAAAATATTTGTGGTTCCAGTTGCAGATGTCATTCGTGTGAGAACAGGTGAGCGTGGACTTGAAGCAGAGAGAATGGCTGGTGGACGATCAGAGATACTTACAGGTGTACATCAAGACGTTACAGACAGCAACTAA___ATCACTTTTAGACACTATAATTGAGCCAAAGCCTGACGCTTGAGTATGGTGCACAGGAGTAAATAGATTGAGATATGGTGATTGGATGGCTTTACATGGAAGTGGTCAAACTTTATCATTTATGTTAATTGACTGTAGAGTTTAAATATTAAAGATTTACGTCTCTAGAGGGGATACATTGTTCATTGTCTTGATAAAATCTTATTCTGTAATATTGTTCAGTTGTGGCTATTAGAATTTGGATCTTTTGAAGTTGAAATACATGCTATCAACATTTTCATTTCCAATAATATTTTGTCAGCTTTGGCAATAACAATCTGAAATTGTAGGAATGTTTGAAAAATAAGGTTGTCTCTGCAGACACACGTACAC

Fln Alignment:

sp_v1.1_unigene17513___MAAHLPLFVKGXXXXXXXXXXXXXXXXXXXXXXXAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRISHVTTGLLKMGIRGVTVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERGLEAERMAGGRSEIL
Q70YP6_______________MAAHLPLFVKGSIFSLPSSTSTSSSCTYSSISHTAASPGFHSSPAAANKSVKLGTMQRMDGVRSVKHRMTSLHAKMEKRQQIKASAQAPNGTNTHPDYVPEANFYKVEAILRPWRISHVTTGLLKMGIRGVTVSDVRGFGVQAGSAERQAGSEFSKDNFVSKVKMEIVVSKDQVEAVIDAIIDEARTGEIGDGKIFVVPVADVIRVRTGERDLKPERMAGGDQRYL

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
73	80		20		0.995493
74	80			20	0.995493
75	80	20			0.995493
77			80	20	0.995493
78			20	80	0.995493
84			20	80	0.995493
85		20		80	0.995493
86		80		20	0.995493
88		40	40	20	1.0
89		20	40	40	1.0
90	20			80	0.995493
91		20	80		0.995493
93		20	80		0.995493
94	20			80	0.995493
105	20			80	0.995493
779	81			18	1.0
780	82	17			1.0
1007		48	51		1.0
1168	5		83		0.999887
1169	83		16		1.0
1185	42	57			1.0
1203	33			66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain