SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17512

Length: 568 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene17512
CGTCGTGACCGTCGTGACCTTGGCTGTCACTCAATCTTTTCGTCTTCAATCTTCATCAACCTTGTGCCATTGAATTGAATCGAATTGAGATCTCCGCCGTGTTATTCGAGTTCAGGTGGTCTATTTTGCGCAGACTATTCATCATCGCTCTGCTCTGCTCTGGTCAAACTGCAGAGGAGAAAGAGAGACCAGACAGGGAAACTGCTATTATTTGGGAAGAAACCCTACTTCTTCCAAGGGATCCAGAAATAGAAAGTAGCCTGCAGAAGAGGTTTTCAGGGCACACGTTCAGAATGCCGAGCTTGCAGAACGATCAGTTATTGCAACTGGAGACAACTTGTGGATCTCTTCTTTACGAGCTCCAGTTAATATGGGACGAAATGGGCGAGCCTGACGAGGAAAGAGATAAAATGTTGCTCCAGCTTGAACAAGAATGCTTGGAAGTTTACAGACGGAAAGTAGATCAATCAAATCGATCAAGGGCTCAGCTTCACCAGGCTATTGCCGATTCCGAAGCAGAGCTCGCATCCATTTATTCTGCCCTCGGAGTTTGCCCTACCATGCCTAA

Ace file of the UniGene sp_v1.1_unigene17512

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein regulator of cytokinesis, putative n=1 Tax=Ricinus communis RepID=B9RHR0_RICCO	-	-	3.0e-32	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Blast2go	protein regulator of	-	-	5.31229e-32	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	cytokinesis by cell plate formation	GO:0000911	Biological Process	5.31229e-32	86%
Blast2go	nuclear division	GO:0000280	Biological Process	5.31229e-32	86%
Blast2go	microtubule polymerization	GO:0046785	Biological Process	5.31229e-32	86%
Blast2go	formation by symbiont of syncytium involving giant cell for nutrient acquisition from host	GO:0052096	Biological Process	5.31229e-32	86%
Blast2go	response to nematode	GO:0009624	Biological Process	5.31229e-32	86%
Blast2go	microtubule binding	GO:0008017	Molecular Function	5.31229e-32	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	5.31229e-32	86%
Blast2go	cortical microtubule	GO:0055028	Cellular Component	5.31229e-32	86%
Blast2go	preprophase band	GO:0009574	Cellular Component	5.31229e-32	86%
Blast2go	phragmoplast	GO:0009524	Cellular Component	5.31229e-32	86%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Microtubule-associated protein, MAP65/ASE1-type	IPR007145	-	5.31229e-32	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AC28

Fln msg: Distance to subject end: 504 aas, your sequence is shorter than subject: 91 - 596

Fln protein: MPSLQNDQLLQLETTCGSLLYELQLIWDEMGEPDEERDKMLLQLEQECLEVYRRKVDQSNRSRAQLHQAIADSEAELASIYSALGVCPTMP

Protein Length: 92

Fln nts: CGTCGTGACCGTCGTGACCTTGGCTGTCACTCAATCTTTTCGTCTTCAATCTTCATCAACCTTGTGCCATTGAATTGAATCGAATTGAGATCTCCGCCGTGTTATTCGAGTTCAGGTGGTCTATTTTGCGCAGACTATTCATCATCGCTCTGCTCTGCTCTGGTCAAACTGCAGAGGAGAAAGAGAGACCAGACAGGGAAACTGCTATTATTTGGGAAGAAACCCTACTTCTTCCAAGGGATCCAGAAATAGAAAGTAGCCTGCAGAAGAGGTTTTCAGGGCACACGTTCAGA_-_ATGCCGAGCTTGCAGAACGATCAGTTATTGCAACTGGAGACAACTTGTGGATCTCTTCTTTACGAGCTCCAGTTAATATGGGACGAAATGGGCGAGCCTGACGAGGAAAGAGATAAAATGTTGCTCCAGCTTGAACAAGAATGCTTGGAAGTTTACAGACGGAAAGTAGATCAATCAAATCGATCAAGGGCTCAGCTTCACCAGGCTATTGCCGATTCCGAAGCAGAGCTCGCATCCATTTATTCTGCCCTCGGAGTTTGCCCTACCATGCCTAA

Fln Alignment:

sp_v1.1_unigene17512___ETTCGSLLYELQLIWDEMGEPDEERDKMLLQLEQECLEVYRRKVDQSNRSRAQLHQAIADSEAELASIYSALG
D5AC28_______________DTNCGSLLQDLELIWDEVGASDGEREKMLLQLEQECLEVYRRKVDQANLSRARLHQLLADSEAELEHLISALG

SSRs (tot: 1)

Start position	End position	Sequence	Length
147	162	GCTCT GCTCT GCTCT G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain