SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17491

Length: 985 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17491 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[S] COG1652 Uncharacterized protein containing LysM domain	-	-	8.0e-06	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	49%
Blast2go	protein	-	-	2.75216e-26	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell wall macromolecule catabolic process	GO:0016998	Biological Process	2.75216e-26	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidoglycan-binding Lysin subgroup	IPR002482	-	2.75216e-26	67%
Blast2go	Peptidoglycan-binding lysin domain	IPR018392	-	2.75216e-26	67%

Full-Lengther Next Prediction

SNPs (tot: 35)

Position	A %	C %	G %	T %	Probability
254	77		22		0.999999
256			22	77	0.999999
257	22			77	0.999999
260			22	77	0.999999
261	77	22			0.999999
262		22	77		0.999999
263	22			77	0.999999
264	22		77		0.999999
265			22	77	0.999999
266	77		22		0.999999
270	77	22			0.999999
272	22	77			0.999999
273	66	22	11		0.999999
276		85		14	0.993533
354		16	83		0.994512
440	25	75			0.996473
442		75	25		0.996473
443	25	75			0.996473
444	75		25		0.996473
451		25		75	0.996473
452	75	25			0.996473
454	25	75			0.996473
455	75		25		0.996473
457		75		25	0.996473
460	75	25			0.996473
461	75		25		0.996473
464	75		25		0.996473
819			7	23	1.0
822		76	23		1.0
825	23	76			1.0
829	75	25			1.0
830		25	75		1.0
832	25		75		1.0
833			25	75	1.0
840	27	72			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain