SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17490

Length: 1451 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17490

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Serine/threonine-protein phosphatase n=1 Tax=Picea sitchensis RepID=C0PPR8_PICSI	-	-	92%
FL-Next	sp=Serine/threonine-protein phosphatase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	protein	-	-	90%

Source	GOs	Term	Type	Identity
Blast2go	protein dephosphorylation	GO:0006470	Biological Process	90%
Blast2go	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	90%
Blast2go	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Metallophosphoesterase domain	IPR004843	-	0.0	90%
Blast2go	Serine/threonine-specific protein phosphatase/bis(5-nucleosyl)-tetraphosphatase	IPR006186	-	0.0	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PPR8

Fln msg:

Fln protein: METEALDDVITRLLEVRGSKPGKQVQLSETEVRQLCVVSKDIFMKQPIMLELEAPVKICGDVHGQYSDLLRLFEYGGLPPQSNYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELTQLEQIKNIPRPTDVPDTGLLCDLLWSDPCNVIQGWGPNDRGVSYTFGPDKVSDFLQKLDLDLICRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQTLMCSFQILKPAEKKPRAGYGNSETQRAGTPPRGNR*

Protein Length: 322

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTCTCTCGACACCTTTCCCGTGATCAGTAAATTCGTTGGGAGGCTTAAAGACCAGGAGAGGAGGCAGGGGGAAACACTAAAAATTTAAAGCTAATAATAAGCTAATAAGTGTAGGAACGTAGGAAGGAGGTTTCTGACAGGAGGATTGA_-_ATGGAAACTGAGGCTTTGGACGATGTTATCACCAGGTTGCTCGAGGTGAGAGGCTCAAAGCCTGGCAAGCAGGTTCAATTATCGGAGACGGAGGTCCGCCAGCTTTGCGTTGTCTCGAAGGACATTTTCATGAAACAGCCCATCATGTTGGAATTAGAGGCCCCCGTCAAGATCTGCGGTGATGTTCATGGCCAGTATTCTGATCTTCTACGACTTTTTGAATATGGTGGCTTACCGCCACAATCAAATTACTTATTCTTGGGAGATTATGTGGACCGGGGCAAACAAAGCCTAGAGACAATATGTCTCCTCCTTGCTTTCAAAATTAAATACCCAGAAAACTTTTTCCTTCTGAGGGGAAATCATGAATGTGCCTCAATAAATCGCATATATGGTTTCTATGATGAGTGCAAGCGCAGATTCAATGTTAGACTATGGAAACTTTTTACAGACTGTTTCAACTGCCTGCCTGTTGCTGCACTTATAGATGAAAAGATCCTATGCATGCATGGTGGTCTTTCACCTGAACTGACCCAGTTGGAACAAATAAAGAATATACCTCGACCTACAGATGTGCCAGATACAGGGTTGTTATGTGATCTTCTTTGGTCAGACCCCTGCAATGTAATTCAAGGATGGGGCCCGAATGACAGAGGTGTTTCTTACACATTTGGTCCTGACAAGGTGTCTGATTTTCTCCAAAAGCTTGATCTGGATCTCATTTGTCGTGCACATCAGGTGGTGGAGGATGGTTATGAATTTTTTGCTGATAGGCAGCTTGTTACAGTCTTCTCAGCCCCAAATTATTGTGGTGAATTTGACAATGCTGGTGCAATGATGAGTGTTGACCAAACACTAATGTGCTCTTTCCAGATTCTTAAGCCAGCAGAGAAAAAACCAAGAGCTGGTTATGGAAACTCTGAGACACAAAGAGCTGGGACTCCTCCTCGTGGTAATAGGTAA___TGGCGAGGATGCAAAGAGAGATTGCAGTCACTGGGATTGTACTCTTGGCTAGCAACTTAGGGGTCATGGTGCAATATATTTTTATATATGGTATCTAAGTAAGTTTTGGAATATATGCAGAAATCTGTATGTTTGGGCTTGTACTCAATTGAATATTTGGTTCCATTTTTTAACCAAAAACTTGTAATGGTGGTCACCACCAGCTTATATTATGGGATTAACTGAGTATGCTATGTATAATGGTCAATGAGACTGCCAATAAAGGAAAAACAAAACATGTACTAGTTTTTCTTCTTAGTTTGCACGTTTGCA

Fln Alignment:

sp_v1.1_unigene17490___METEALDDVITRLLEVRGSKPGKQVQLSETEVRQLCVVSKDIFMKQPIMLELEAPVKICGDVHGQYSDLLRLFEYGGLPPQSNYLFLGDYVDRGKQSLETICLLLAFKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELTQLEQIKNIPRPTDVPDTGLLCDLLWSDPCNVIQGWGPNDRGVSYTFGPDKVSDFLQKLDLDLICRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQTLMCSFQILKPAEKKPRAGYGNSETQRAGTPPRGNR
C0PPR8_______________METEVLDDVIGRLLEVRGSKPGKQVQLLEAEVRQLCILSKDIFMKQPNLLELEAPVKICGDVHGQYSDLLRLFEYGGLPPESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKRRFNVRLWKLFTDCFNCLPVAALIDEKILCMHGGLSPELNSLDQIRNIPRPTDVPDQGLLCDLLWSDPSNEIQGWGSNDRGVSYTFGPDKVSDFLQKLDLDLICRAHQVVEDGYQFFADRQLVTVFSAPNYCGEFDNAGAMMSVDQSLMCSFQILKPAEKKPRTVY--AETQRAGTPPRGNR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
36	85			14	0.993533
37		85	14		0.993533
42		11		88	0.923564
43		11	11	77	0.968132
44		88	11		0.923564
45	11	88			0.923564
48	11			88	0.923564
49	11		88		0.923564
50	77			11	0.968132
52		88		11	0.923564
54		22	77		0.999999
56	77	11	11		0.968132
63	11			88	0.923564
64		11		88	0.923564
517	88	11			0.999952
975		88		11	0.999937
1270	25			75	1.0
1321		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain