SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17487

Length: 1016 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17487

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldose 1-epimerase (EC:5.1.3.3); K01785 aldose 1-epimerase [EC:5.1.3.3]	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	aldose 1-epimerase family protein	-	-	72%

Source	ECs	Term	Type	e value	Identity
AutoFact	Aldose 1-epimerase.	EC:5.1.3.3	-	0.0	55%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Glycolysis / Gluconeogenesis	00010		0.0	55%
AutoFact	Biosynthesis of secondary metabolites	01110		0.0	55%

Source	GOs	Term	Type	Identity
Blast2go	hexose metabolic process	GO:0019318	Biological Process	72%
Blast2go	carbohydrate binding	GO:0030246	Molecular Function	72%
Blast2go	isomerase activity	GO:0016853	Molecular Function	72%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEE6

Fln msg: Separated hits, possible frame ERROR between 106 and 112, your sequence is shorter than subject: 205 - 398

Fln protein: VSATYTISGDMELRLDMEAKSRNKATPVSLINHGxxxNLAGEGSGRDILGNSVTIWASHYTPTDSQFIPNGQILPVKGTPLDLTKEVIVGSRINQLNNSGNVGFNHNYVLDGPKLKNGLRPGARMKDHWSSRVMEVWTTAPGMQFYTSNFLNTVGKGGAIYKPHSAFCFESQAFPNAVNQPNFPSIIVNPGQIYKHTMLIKVLC*

Protein Length: 206

Fln nts: TGTATCTGCAACGTATACAATAAGTGGAGACATGGAGCTGAGACTTGATATGGAAGCGAAATCAAGGAATAAGGCAACACCTGTGAGTTTAATCAATCATGGTTAxxxxxxGAACCTTGCAGGAGAAGGCAGTGGGAGGGACATCCTGGGAAACTCTGTCACAATATGGGCTTCACATTATACTCCTACAGATAGCCAATTTATTCCAAATGGCCAGATATTGCCTGTAAAGGGAACGCCATTGGACTTGACCAAAGAAGTGATAGTGGGTAGCAGAATTAACCAGTTGAATAACAGTGGAAATGTTGGATTCAATCATAATTATGTTCTCGATGGACCCAAGTTGAAGAATGGGCTAAGGCCTGGTGCAAGGATGAAGGATCATTGGAGTTCCAGAGTGATGGAGGTGTGGACGACTGCACCAGGCATGCAATTCTATACGAGTAATTTTCTGAACACGGTAGGCAAAGGAGGTGCGATATACAAGCCACACTCTGCCTTTTGCTTCGAGTCTCAGGCATTTCCCAATGCAGTGAATCAACCTAATTTCCCTTCTATAATCGTTAACCCTGGCCAGATCTACAAGCACACCATGCTCATCAAAGTTCTCTGTTGACAAGTAATTACCAATATTGTTTTTGAATCCAATGGACTCACAAACATAATTTTTGGGTTCCATCGGCTGTCATCCACCAGTATAGTTGATAGCTTCACGCTGGCTTAATCTAACTTTCAGCCATTCATGGCGAGTGTTAATCTTGAACTTCAATATGTCCCTAGTGAGTTATTGAGGACTCTTGATCTGTTCGACACGAGTGTCTTTGGATAATTGTGTTAGGAATAGTACTGTATGGAATTCATGTTTCATGATCTGTATAGAGGATACTAATAGTATTTCATTGCCGCATTTGTTAGTAAGAATCTGGTGGTAAATCTTGACTTAAAAATCAAATAAGTGAAAATGGAAGCAATGCTTCACGTTGGCTTTTCAAATGTTGAGAACGATTTTTCACAAAA

Fln Alignment:

sp_v1.1_unigene17487___VSATYTISGDMELRLDMEAKSRNKATPVSLINHGYxxNLAGEGSGRDILGNSVTIWASHYTPTDSQFIPNGQILPVKGTPLDLTKEVIVGSRINQLNNSGN-VGFNHNYVLDGPKLKNGLRPGARMKDHWSSRVMEVWTTAPGMQFYTSNFL-NTVGKGGAIYKPHSAFCFESQAFPNAVNQPNFPSIIVNPGQIYKHTMLIK
D5AEE6_______________VSATYTISGDMELRLDLEAVPRNKATAVSLINHAYxxNLAGESSGRDILGNSVTIWASHYTPTDSQLIPTGQILPVNGTPLDLTKEVIVGSRINKLNSSEKPPGFDHNYVLDGPKLKNGLRPGARMKDHWSSRVMEVWTTAPGMQFYTSNNLKDTVGKGGVIYKAHSAFCFESQAFPNAVNQPKFPSVIVKPGQIYKHTMLFK

SNPs (tot: 51)

Position	A %	C %	G %	T %	Probability
130			60	40	1.0
131		40	60		1.0
132	40	60			1.0
145	85		14		0.993533
148		85	14		0.993533
151	14		85		0.993533
152		14	85		0.993533
153	85	14			0.993533
154	85			14	0.993533
155	85			14	0.993533
156		85	14		0.993533
157			14	85	0.993533
325		11		88	0.923564
326	77			22	0.999999
327		11		88	0.923564
328	11		88		0.923564
475	33		50		1.0
479		85		14	0.993533
490		83	16		0.994512
501	14	71	14		0.984337
503		14		85	0.993533
504			14	85	0.993533
508		14		85	0.993533
510		85		14	0.993533
512	85		14		0.993533
513		14	85		0.993533
515		85	14		0.993533
519		14	85		0.993533
520			85	14	0.993533
534	50	50			1.0
559	66		33		0.997452
564		75		25	0.996473
570		25	75		0.996473
587	75		25		0.996473
601	25			75	0.996473
613			75	25	0.996473
630	25		75		0.996473
643	66		33		0.997452
672	14	14	71		0.984337
673		14	85		0.993533
674			71	28	1.0
676	16		16		0.988813
678			14	85	0.993533
679	14	85			0.993533
681	85	14			0.993533
683		85		14	0.993533
752	71			28	1.0
814	14	85			0.993533
816	14	85			0.993533
817	14		85		0.993533
879	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain