SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17483

Length: 1910 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene17483 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Clathrin adaptor medium chain protein MU1B, putative n=7 Tax=rosids RepID=O22715_ARATH	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	85%
Blast2go	clathrin adaptor complexes medium subunit family protein	-	-	93%

Source	GOs	Term	Type	Identity
Blast2go	vesicle-mediated transport	GO:0016192	Biological Process	93%
Blast2go	intracellular protein transport	GO:0006886	Biological Process	93%
Blast2go	protein binding	GO:0005515	Molecular Function	93%
Blast2go	clathrin vesicle coat	GO:0030125	Cellular Component	93%
Blast2go	clathrin adaptor complex	GO:0030131	Cellular Component	93%

Source	InterPros	Term	Type	Identity
Blast2go	Clathrin adaptor, mu subunit	IPR001392	-	93%
Blast2go	Clathrin adaptor, mu subunit, C-terminal	IPR008968	-	93%
Blast2go	Longin-like	IPR011012	-	93%
Blast2go	Clathrin adaptor, mu subunit, conserved site	IPR018240	-	93%
Blast2go	AP complex, mu/sigma subunit	IPR022775	-	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LRZ0

Fln msg:

Fln protein: MAGAASALFILDMKGRVLIWRDYRGDISSSQAEQFFSNLLAKEGDAASQNPVVYDNGVTYLFIQHNNVYLMTASRQNSNAASLLLFLHRVVEVFQHYFEVLEEESLRDNFVVVYELLDEMMDLGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQHKKNEVFLDVVESVNMLVNSNGQIVQSDVVGALKMRAYLSGMPECKLGLNDRVLLEAQGRAAKGSIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWIEAQVERHSKSRVEYSVRARSNYKDRSTATNVDIQLPVPADATTPHIRTSMGSASYAPERDALLWKIKSFPGGKEYMLRAEFVLPSVTAEEAAPERQAPIRVKFEIPYFTVSGIQIRYLKIIEKSGYLALPWVRYITKAGDYELRMI*

Protein Length: 429

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTCTTTCATGTCATAATCTGCCGCGAAGAGAACCTTTTGGCGAACAAGCATGTCTGCATTCTTTTAGATAAATTTTGTCTCCTACAATCCATGCAGCAATGGAGAAACCTCCAATGGTATTCACAAATTTTAGGGCAATCTGCAGAAAATTTAATCAAAACCAAGCATCGAGCTCAGGAATTTGATTAGAACCTTCAAGGATTTCGGGGTTTGGGGATTTCTTTTTGCCGGCC_-_ATGGCAGGTGCTGCATCTGCTTTATTTATTTTAGACATGAAGGGCCGGGTTCTCATATGGCGGGATTACCGAGGTGACATCTCGTCATCCCAGGCTGAGCAATTCTTCTCAAATCTTCTTGCGAAAGAGGGTGATGCTGCATCACAAAATCCTGTGGTTTATGACAATGGTGTCACTTATTTGTTCATTCAACACAACAATGTTTACCTTATGACAGCATCAAGACAGAACTCCAATGCAGCTAGCTTATTGCTATTTTTACACCGGGTTGTGGAGGTTTTCCAGCACTATTTTGAAGTGTTGGAAGAAGAATCTTTGAGAGATAATTTTGTTGTGGTGTATGAACTATTGGATGAAATGATGGATTTGGGATACCCTCAATATACAGAGGCAAAGATTCTTAGTGAATTCATTAAAACCGATGCTTATAGAATGGAAGTCACCCAACGTCCTCCAATGGCTGTTACAAATGCAGTTTCATGGCGAAGTGAAGGAATACAGCACAAGAAAAATGAGGTATTCTTGGATGTGGTGGAAAGTGTCAATATGCTTGTGAATAGCAATGGACAAATAGTGCAGTCAGATGTAGTTGGTGCTTTGAAGATGAGAGCCTACTTGAGTGGAATGCCAGAATGCAAGCTTGGTCTTAATGACAGGGTGCTACTAGAAGCTCAAGGCCGAGCAGCAAAGGGTTCCATTGATCTAGAGGACATCAAGTTTCATCAGTGTGTTCGTCTAGCTCGTTTTGAAAATGATAGGACTATATCTTTCATACCTCCTGATGGGGCTTTTGATTTGATGACATATAGACTCAGCACTCAGGTAAAGCCATTGATATGGATTGAAGCTCAAGTGGAACGACATTCAAAAAGTCGAGTAGAATATTCAGTGAGAGCACGCAGCAACTATAAAGATCGCAGTACAGCAACAAATGTTGACATACAGCTGCCTGTTCCGGCTGATGCTACCACGCCTCATATACGAACCTCCATGGGTTCTGCTTCTTATGCACCAGAGAGGGATGCATTGCTTTGGAAAATTAAATCATTTCCTGGTGGAAAGGAATACATGCTGAGGGCTGAATTTGTCCTTCCTAGTGTCACTGCTGAAGAGGCAGCCCCGGAGAGGCAGGCACCAATTCGCGTCAAATTTGAGATACCATATTTTACTGTGTCAGGAATCCAGATCAGGTACTTGAAAATTATTGAAAAGAGTGGATATCTGGCTTTGCCATGGGTTAGGTATATAACAAAAGCAGGTGACTATGAACTAAGGATGATCTAA___AGGATACATGTGGCATATTCTAGATGAGGAAAAAGGTTCTCCATGGTCTCTTTGTTAGTGGTTGTCTACTCATGGATCATGAAGAATTCTTTTTTCTGAAATCATTGACTCTGAGGAAGTTGGAACAGTATCATATTATAATGTTTGTCTAGCAGTGGAGTTAGTGAATCTTGTCAATTTTCCAAATGACAAGTTTCACTTTGTTGATTATTCTCTTACTTGTCTTGTATTTCAATTTGAGTTTGTTACCCAAATTATTCTCGAGGAACATAGGCTTCTGTACAAGCTTATATAATGAAAGTCACTTGTAACTTTGTTAGTTTCTGTCTCAGTAGACATAAAATAGCTTAATGCCATATTGTAGAAGT

Fln Alignment:

sp_v1.1_unigene17483___MAGAASALFILDMKGRVLIWRDYRGDISSSQAEQFFSNLLAKEGDAASQNPVVYDNGVTYLFIQHNNVYLMTASRQNSNAASLLLFLHRVVEVFQHYFEVLEEESLRDNFVVVYELLDEMMDLGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIQHKKNEVFLDVVESVNMLVNSNGQIVQSDVVGALKMRAYLSGMPECKLGLNDRVLLEAQGRAAKG-SIDLEDIKFHQCVRLARFENDRTISFIPPDGAFDLMTYRLSTQVKPLIWIEAQVERHSKSRVEYSVRARSNYKDRSTATNVDIQLPVPADATTPHIRTSMGSASYAPERDALLWKIKSFPGGKEYMLRAEFVLPSVTAEEAAPERQAPIRVKFEIPYFTVSGIQIRYLKIIEKSGYLALPWVRYITKAGDYELRMI
B8LRZ0_______________MAGAASALFFLDLKGRVLVWRDYRGDVSSSQAERFFSKLIEKEGDPGSHDPVVHDSGITYMFIQHNNVYLMIASRQNCNAASLLLFLHRVVDVFKHYFEELEEESLRDNFVVVYELLDEMMDFGYPQYTEAKILSEFIKTDAYRMEVTQRPPMAVTNAVSWRSEGIRYKKNEVFLDVVENVNILVNSNGQIVRSDVVGALKMRTYLSGMPECKLGLNDRVLLEAQGRSTKGKAIDLDDIKFHQCVRLARFGNDRTISFIPPDGSFDLMTYRLSTQVKPLIWVEAQVERHSRSRVEFTVKARSQFKERSTATNVEIELPVPADATTPIVRTSMGSSVYAPEKEALLWKIKSFPGGKEYMLRAQFSLPSISAEESIPEKRAPIRVKFEIPYFTVSGIQVRYLKIIEKSGYQALPWVRYITMAGEYELRMI

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
236		16		83	0.994512
237		16	83		0.994512
280	50		50		1.0
281	75		25		0.996473
387	75		25		0.996473
1806	87		12		0.992554
1813	87			12	0.992554
1814	87		12		0.992554
1816	75		12		0.975346
1818			12	87	0.992554
1819	12			87	0.992554
1821			12	87	0.992554
1823		14		85	0.993533
1826	85		14		0.993533
1827	71		14		0.984337
1828			85	14	0.993533
1829	85	14			0.993533
1831		14		85	0.993533
1833	14	85			0.993533
1834	85	14			0.993533
1854	66			16	0.988813
1856	16		83		0.994512
1857			16	83	0.994512
1859		83	16		0.994512
1860	16			83	0.994512
1862	16			83	0.994512
1864		50		33	1.0
1865		16	83		0.994512
1867		33	66		1.0
1868	16	16	66		0.988813
1871			75	25	0.996473
1872	75		25		0.996473
1874		33		66	0.997452
1876		33		66	0.997452
1880	75		25		0.996473
1893			66	33	0.997452
1900		66		33	0.997452
1904	33		66		0.997452
1912		66		33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain