SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene17478

Length: 1042 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene17478

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	acetylesterase, putative	-	-	40%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	lanatoside 15 -o-acetylesterase	-	-	64%

Source	GOs	Term	Type	e value	Identity
Blast2go	lipid metabolic process	GO:0006629	Biological Process	0.0	64%
Blast2go	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lipase, GDSL	IPR001087	-	0.0	64%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LK87

Fln msg: your sequence is shorter than subject: 315 - 384

Fln protein: ADMASGRLSIDYFAQALGFPFLSPYLQSVASNFGHGANFAAAGATARDTDSFIAPISLSVQINQFKVFKQQVLHSIEAHGPLSFLPSAEAFKSGLYTIEIGGNDFSYAYMNLKLTTTQVKATILPKVARSIVGAVQALYNEGARTFLVRDVTPQGCGPFWLTFFSHTSNDLDEHGCSVSYNEAVVHFNTVLRYQLSSIRKQLTDATIIYVNTYDIVYDFFANPSKYGFKATTTACCGIGGKYNYNYAIQCGSTGTINGSTVRAMSCSDPASYVSWDGVHWTDEANRLLTNQILSGKYFEPSFSLHTFCDLHSGS*

Protein Length: 316

Fln nts: GCAGATATGGCGAGTGGAAGGTTGTCCATAGATTATTTTGCCCAGGCTTTGGGATTCCCGTTTCTGAGTCCATATTTGCAGTCCGTGGCTTCAAATTTCGGGCATGGAGCCAACTTTGCCGCGGCAGGGGCAACTGCTCGTGACACCGACTCCTTCATTGCTCCCATTTCTCTGAGTGTTCAGATCAATCAGTTCAAGGTCTTCAAGCAACAGGTTCTCCACAGCATTGAGGCGCATGGTCCTCTCAGCTTTCTCCCCAGCGCTGAAGCATTCAAGAGCGGGCTGTACACTATAGAGATCGGGGGAAACGACTTCAGTTACGCATACATGAACCTCAAACTAACTACCACCCAGGTGAAAGCGACCATTCTTCCCAAGGTTGCGAGGTCAATTGTAGGAGCTGTACAGGCTCTGTACAATGAGGGAGCAAGGACTTTTCTGGTGAGGGATGTGACGCCTCAAGGATGTGGTCCCTTCTGGCTCACTTTTTTCTCTCATACTTCCAATGACTTGGATGAGCATGGCTGCTCCGTTTCCTACAACGAGGCAGTTGTCCATTTCAACACAGTCCTACGATATCAGCTCTCCTCCATCCGCAAACAACTGACAGACGCCACCATCATCTACGTGAATACATACGACATTGTCTATGATTTCTTCGCCAATCCTTCTAAATATGGTTTCAAGGCCACAACGACAGCATGTTGCGGAATTGGAGGAAAGTATAACTACAACTACGCCATACAGTGTGGATCCACTGGTACTATCAACGGGAGCACTGTGAGGGCGATGTCATGCTCGGATCCAGCCTCCTACGTTAGCTGGGACGGGGTCCACTGGACTGACGAGGCCAACAGACTGCTCACCAACCAAATTTTGAGTGGAAAATACTTTGAACCATCCTTTTCTCTTCATACCTTCTGTGATCTCCATTCAGGATCATAG___TACGCTTTCGTTGATGTATTGGAAATGTTGACCTCAAGACTGTACGTACTGGTTGATGTATTTGTAATGGTGAGCTTAAAATTCTAATAACATATCT

Fln Alignment:

sp_v1.1_unigene17478___GRLSIDYFAQALGFPFLSPYLQSVXXXXXXXXXXXXXXXXXXXXXXFIAPISLSVQINQFKVFKQQVLHSIEAHGPLSFLPSAEAFKSGLYTIEIGGNDFSYAYMNLKLTTTQVKATILPKVARSIVGAVQALYNEGARTFLVRDVTPQGCGPFWLTFFSHTSNDLDEHGCSVSYNEAVVHFNTVLRYQLSSIRKQLTDATIIYVNTYDIVYDFFANPSKYGFKATTTACCGIGGKYNYNYAIQCGSTGTINGSTVRAMSCSDPASYVSWDGVHWTDEANRLLTNQILSGKYFEPSFSLHTFCDLHS
B8LK87_______________GRLSIDFFATALGMPFLSPYLQSVDSSFGHGANFAAAGATAVSVDSFIAPIDLTVQINQFKVFKQQVLNTIKKHGAQSYLPSADAFDKGIYILEIGGNDFSYGYKNLKQSPGQVKQSILPKVAKSVAAAVKELYNEGARTILVKDVGPQGCQPFWLTYFGHSSNDFDSHGCSISYNDAVRYYNGLLKGQVGSLRGQLKGANVIYVNTYDILYDFIANPSRYGFKQTTRACCGVGGKYNYDYAVQCGISGTIAGHPVKAVSCAYPETYVNWDGVHWTDRANRILTKQILGGKYFEPAFSIASQCDIHS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
446	88		11		0.923564
450	88		11		0.923564
505		20		80	1.0
550	20	80			1.0
609		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain